Detail information of AfisC2G05546


Location
GeneChrStartEndStrand
AfisC2G05546chr2914990240914994962+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020257483.11.4e-118protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X2
SwissprotQ7X9V2.12.7e-106Protein CHROMATIN REMODELING 13
trEMBLA0A5P1FBA71.0e-118Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT3G12810.170.007e-117 417chr13;PIE1;SRCAPSNF2 domain-containing protein / helicase domain-containing protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
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Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00271.28Helicase_CFamily98953.62.2e-14

Gene Ontology
AccessionOntologyName
GO:0005515Fprotein binding
GO:0000812CSwr1 complex
GO:0003677FDNA binding
GO:0003713Ftranscription coactivator activity
GO:0043486Phistone exchange
GO:0016020Cmembrane
GO:0042742Pdefense response to bacterium
GO:0004402Fhistone acetyltransferase activity
GO:0005829Ccytosol
GO:0005198Fstructural molecule activity
GO:0005524FATP binding
GO:0005618Ccell wall
GO:0005794CGolgi apparatus
GO:0006357Pregulation of transcription from RNA polymerase II promoter
GO:0008026FATP-dependent helicase activity
GO:0009910Pnegative regulation of flower development
GO:0016514CSWI/SNF complex
GO:0016569Pcovalent chromatin modification
GO:0046686Presponse to cadmium ion
GO:0030154Pcell differentiation
GO:0048451Ppetal formation
GO:0048471Cperinuclear region of cytoplasm

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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