result

Gene information

Detail information of AfisC2G05615

Location

Gene	Chr	Start	End	Strand
AfisC2G05615	chr2	926363398	926365800	-

Sequences

CDS

>AfisC2G05615
ATGCTTTTGAGTTCCTTCCAAAGGCAAGGGGTTATTCAAGAAGAAGGCTCGAACTTTTGCGGTGATTTTAGCAACGATAAGCTAAGACAGCCGTTTAATACCGAACCAACTTCGGTTTTGAATAGGATAATCGGAAGCCCAAGCACTCAGAATTCATCCTCAGAGCTGTCGTTTTCTTTTGGAAGCGCAAGCGCCGCCGCAGGCGGCGTCGCGTCGTCGGGTTCTGCTGCCGGAGCGCCGGACTTCAACCATGTGCCAGTTGGCATCGATGCAGGACCTGATAAATGCAATTGGGAAGCAATGTTTCCTAGCAATGGCAATGACAGCAACTTTCTTCATAGTTCAGGTTTCGGGTATGTAGATTCTTTGGTTAAGGAACCCGTTAGTGGCATGGATCCCTTAAGCTTGATCGGTTTCCAAGAACCAATTGTAGAAAAACAACATCCCGTTTTAAACTGGAATAATGTTGTTTTGAACCAAAATCGGTTTGAGTTTTCTAATCAAAATCCATCCTTTTTTCTTCCATTGTCTCAATTCAATGCTCCTTTAGAAACCCATAATGCGCAATTTGTTGATTCTAGTATGGCTGCTAGCAACAATAGCAATTACGGTGATACCAATGGTAGTCTTTTTCTTAAAAGAAACCAACTTCAAAATGGTTATGTTAAGAATAAAGATGAATTAGCAAATCAGCAGCAAATTCTAGTGAATCAGTTGTTTAAAGCAGCGGAATTCATTGAAGCTAGTAATAACATGTGCGCAAATGAGATATTGGCGCGGCTCAATCAAATCTTCCCTTCATTACCTATGGTTGGGAAACCAATATTTAGAACTGCTTTCTATTTTAAGGAAGCTCTTCTACAACTTACTAATAATATTCCACTTTTCACTACTGCATTATCAACACCAATGGATGTTATTCTTAAGCTTAATGCATATAAAACGTTTTCGGATATTTCTCCTATAGTCCAATTCACAAACTTCACTTCTATTCAAGCAATACTCGAAGAGGTCAATGGTTACAATAGCATTCATATTATTGATTTTGACATAGAAGTTGGTGCTAAATGGTCTTCATTCATGCAAGAATTATCAAGTAAGAGAGGTGAATGTGATTCTATTCCTTCACTTAAAATCACCGCTTTTGCTTCAAACGCTTCTCATCACCCTCTTGAGCTACATTTGACCAGTGAAAACCTCTCTCATTTTGCGAAAGATTTGAACATCCCATTTGAGTTCGATGTGCTTAGTCTCGACTCTTTTGACCCTTTAGCATTTCTTGGTATGTCATCCAATAATAGCAATCAAGCGATTGCGGTCAACTTTCCAATTGGCACTTGGTTGAATCATCAATCTATGGATTTCATTCTTCGATTCGTGAAACAACTGAACCCTAAAGTCGTAGTTTCGATTGATCATGGATGTGATAGGAGCGAGCTACCATTTTCACACCACTTTCTTCATGCATTTCAATCGTGCACTATATTACTTGATTCAGTAGATGCTTTTGGTCTGAATCACGACGTTGTTAACAAAATTGAAAAGTATTTGGTGCAACCAAGGATTGAGAATGTGATGTTAGGTCGATATAGAGCTATGGGAAAAACAATGCCATGGAGGAGCTTATTTGGTTCTGTTGGATTAACTCCACTTCAATTTAGTAGTTATACAAAGACTCAAGCTGAATGCTTGTTGAAAAGGGTGCAAGTTAGCGGTTTTCAATTGGAGAAGAAGCATGATTCGATGCTCTTGTGTTGGCAAAGAGGTGAGCTTGTTTCAGTTTCTGCTTGGAAGTGA

Protein

Gene

>AfisC2G05615
GTTCGGCCATGATAATAATTCATGCATTTAACTTCCGCTTATTTTTCTAATTTTCAACCGAGTTCAAACCTTTCAGGCCTTTTCTCCTTTTCCACTCTTCAATCTCGACAATACCCTTAAAATTCTATTTTCTGAAGAGGAGCCATAGAAAAATTCGTGAACAGTGATGCTTTTGAGTTCCTTCCAAAGGCAAGGGGTTATTCAAGAAGAAGGCTCGAACTTTTGCGGTGATTTTAGCAACGATAAGCTAAGACAGCCGTTTAATACCGAACCAACTTCGGTTTTGAATAGGATAATCGGAAGCCCAAGCACTCAGAATTCATCCTCAGAGCTGTCGTTTTCTTTTGGAAGCGCAAGCGCCGCCGCAGGCGGCGTCGCGTCGTCGGGTTCTGCTGCCGGAGCGCCGGACTTCAACCATGTGCCAGTTGGCATCGATGCAGGACCTGATAAATGCAATTGGGAAGCAATGTTTCCTAGCAATGGCAATGACAGCAACTTTCTTCATAGTTCAGGTTTCGGGTATGTAGATTCTTTGGTTAAGGAACCCGTTAGTGGCATGGATCCCTTAAGCTTGATCGGTTTCCAAGAACCAATTGTAGAAAAACAACATCCCGTTTTAAACTGGAATAATGTTGTTTTGAACCAAAATCGGTTTGAGTTTTCTAATCAAAATCCATCCTTTTTTCTTCCATTGTCTCAATTCAATGCTCCTTTAGAAACCCATAATGCGCAATTTGTTGATTCTAGTATGGCTGCTAGCAACAATAGCAATTACGGTGATACCAATGGTAGTCTTTTTCTTAAAAGAAACCAACTTCAAAATGGTTATGTTAAGAATAAAGATGAATTAGCAAATCAGCAGCAAATTCTAGTGAATCAGTTGTTTAAAGCAGCGGAATTCATTGAAGCTAGTAATAACATGTGCGCAAATGAGATATTGGCGCGGCTCAATCAAATCTTCCCTTCATTACCTATGGTTGGGAAACCAATATTTAGAACTGCTTTCTATTTTAAGGAAGCTCTTCTACAACTTACTAATAATATTCCACTTTTCACTACTGCATTATCAACACCAATGGATGTTATTCTTAAGCTTAATGCATATAAAACGTTTTCGGATATTTCTCCTATAGTCCAATTCACAAACTTCACTTCTATTCAAGCAATACTCGAAGAGGTCAATGGTTACAATAGCATTCATATTATTGATTTTGACATAGAAGTTGGTGCTAAATGGTCTTCATTCATGCAAGAATTATCAAGTAAGAGAGGTGAATGTGATTCTATTCCTTCACTTAAAATCACCGCTTTTGCTTCAAACGCTTCTCATCACCCTCTTGAGCTACATTTGACCAGTGAAAACCTCTCTCATTTTGCGAAAGATTTGAACATCCCATTTGAGTTCGATGTGCTTAGTCTCGACTCTTTTGACCCTTTAGCATTTCTTGGTATGTCATCCAATAATAGCAATCAAGCGATTGCGGTCAACTTTCCAATTGGCACTTGGTTGAATCATCAATCTATGGATTTCATTCTTCGATTCGTGAAACAACTGAACCCTAAAGTCGTAGTTTCGATTGATCATGGATGTGATAGGAGCGAGCTACCATTTTCACACCACTTTCTTCATGCATTTCAATCGTGCACTATATTACTTGATTCAGTAGATGCTTTTGGTCTGAATCACGACGTTGTTAACAAAATTGAAAAGTATTTGGTGCAACCAAGGATTGAGAATGTGATGTTAGGTCGATATAGAGCTATGGGAAAAACAATGCCATGGAGGAGCTTATTTGGTTCTGTTGGATTAACTCCACTTCAATTTAGTAGTTATACAAAGACTCAAGCTGAATGCTTGTTGAAAAGGGTGCAAGTTAGCGGTTTTCAATTGGAGAAGAAGCATGATTCGATGCTCTTGTGTTGGCAAAGAGGTGAGCTTGTTTCAGTTTCTGCTTGGAAGTGATTTTATCTATTAGTTAGTTTATTGCATTGCCTTGTATAATGGAAGGCAATATGGTTCATATAATTGAATATGCTAGTATAATTGTTGGTTTGCCATGTACACACAAATCTTGTGTGGGTTTGCATTTGGGATATTTGCAAGTCTAAAGTTGGCAATATTTAGTTGAAGATGTTAGTAACGATGTTTATGTTGCTTTTATGTTATGTTACGTATGTAATTTGGATGCATTTACATGGCTTTGTTTCAGTTTATGGCCACTGTAAACTTCCCACTGAAGAAAAATGCTGTAGAAATTTCACGACTGTCTGCGCTATAAGCTTGTGTTTACTGATATGCACCAATATGTGTATTTGTTTTGGTTTCATGTGTGCAACTCTTGATGATAATCATTTACAAGTAATTTATTTGTTATGGTTTAATATGTGCAACTCTTGATGAAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020240861.1	3.4e-148	scarecrow-like protein 6
Swissprot	O81316.1	2.6e-84	SCL6-IV
trEMBL	A0A6I9SBU5	1.5e-121	scarecrow-like protein 27

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G00150.1	46.72	2e-87	320	ATHAM3;HAM3;LOM3;SCL6-IV	GRAS family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G05615	AT4G00150.1	366	177	8	235	598	205	554	46.72	2e-87	320
AfisC2G05615	AT2G45160.1	383	203	8	229	598	262	639	42.30	2e-76	283
AfisC2G05615	AT3G60630.1	505	267	17	131	598	132	622	37.03	6e-74	275

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	235	598	293.7	1.7e-87

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003676	F	nucleic acid binding
GO:0005634	C	nucleus
GO:0006281	P	DNA repair
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007623	P	circadian rhythm
GO:0010224	P	response to UV-B
GO:0043995	F	histone acetyltransferase activity (H4-K5 specific)
GO:0048768	P	root hair cell tip growth
GO:0051301	P	cell division
GO:2000028	P	regulation of photoperiodism, flowering

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network