result

Gene information

Detail information of AfisC2G05675

Location

Gene	Chr	Start	End	Strand
AfisC2G05675	chr2	936445380	936448341	+

Sequences

CDS

Protein

Gene

>AfisC2G05675
GAGCAAAGAGAATAGAAATCTCTAATTGGTTAAAATGACAAATCACTCCAAAATCCAAAACCCTACGCTTATAAAAGCCCAATTCATCCAAAGTCATCATCAGTCTCATCTCCATTCTCCACCTCCCCCGTCGTTGCTGCAATGACGAGGCGATGCTCGCATTGCAGTAACGATGGCCACAACTTGCGCACGTGCCCTAATAAAGGGGTGAAAGTATTTGGGGTGCGATTCGATATAAATCAAACTGCACCGATGCGGAAGTCCGTCAGCATGGGAAATCTGTCGCAGCATGTCGAAAGTGGTGGCGCTTCAGCGGAGATTTTGAACGGGTATGCTTCTGATGGGTTTGATCATGGTTCGAGTTCGAGGGAGAGGAAGAAAGGTTCGATCTTTGTAATTGTTTTTGGTTTCTTAATTTTTGCTTTGAGGTTTTATTTTTGATTGCGATCCAAATATTTTATTTTAGTGGTAGGTGTTTGAGTAAGATCGTTTGTTGCCTTTAATGCTTGTTGTCTGTCTATATTGTCGTGTATCTAAATAAGACTCTTGATTATTTATACAGGTAAGAGTATAGAGGTTGGTTTCATTTACATGTATGCTCAACAAAAGTAAAAACTATGAAATCAGATTATTGTTTTTTTTTTTCAACGGTCCATTTTGATTTTAAAACAAATAAGATCGACCTTGGGTAATATGCATATTTAAAATTCATTATTTTTTAAATCATACGGTCTCCATCAATGTGATTATAAGTTATTAAGTTTGTTTAATGTTTACAAATTCACTTAGGGCATCTTCAGTTCATTCAGAATTGAATATTCAGCTCTGAACTGGACTGTGAACCCCAGGGGTCAGACGCCATTTAATGGGCGCCTGACGCCAAGCGTCCATTAACTGGGCGCGTCTGACGCCAGGCTCCCATTAAATGGATGCCTGGTACCCCCACAATTGGGAGGCTTGGGCGCCCATTAAATAGACGTCCAGCTCAGATCAGGATTCTGAATTGGATTATGAACATTCAACTAAATTTGGGTCTTAATCTGACGACTGGACAATTTTTTTCGTCATATTCAGCGAATAATTTTACCACTGGAGTTGCCCTTAGATCTCTTATAACGAATTGGTTTATCTTGAAGAAGTGGTAAATTGGATTTATGTGTTAACTCTAATAATGCATTAGTTTGGGCGATAATGAATTGGAAAGACCAAAACATATGTGATTCTATGTTTAGTCATTTTTTATCTTTGATTTAGTATTTATCCAGTACTTTGGTATATCATCCCTGGCAGGAATGGCATGGACTAAAGAAGAGCACAAGCATTTTTTACTTGGACTGGAAGTATTAGGTAAAGGAGATTGGCGAGGTATAGCACGCGCCTTTGTTCCTTCAAGGACGCCTACTCAGGTTGCTAGCCATGCTCAAAAGTATTTTAATCGGCTCAACCACCATCAAATTTTGAGGAGGAGAAGGTCTAGCGTTTTTGATATGGCGCTAGAAGAAGTTGGTTTCTCCTATCTTTTTAATCTTAGTTAGATATGTTTTCCTTCTTCTAAATGGTTATTTTGCAAAATAGTAGGATTGTAAATTATCTAAAAAAAATGTGGTTGCAATGGTTCCTTTGATTAAAAAAAAAAGCCTAGAGGATAATAAGCTATAGATTCACAAGACATGATGGTTGTGATGTAAAAAATAGATGATATAGTTAATAAGTTAAACTACAATGAAGAGAGATTAGGATTTTACTTTATTTAATCACTTTGTTAGAACATGCACACTATACACACGAAGGAATGAGTTGGTGAAAGCTAACAAAGCATGTAGCTTTTTTGTATTGATGCATGGTCCACCACAAACTTCAGTACATAGGTATTCACGACATACTTTCAACACTCCCTTGGATACCTATGAATTTTCAAACCAAAACGTACGATGATTAAGATTTAGAAACAAATCGCCTCCGCGTTTTTGTTTCATTGGAAGCACAACCCATCAAATGTATGCACCCTAGAATGAGTGAGATTTGTATGGTGATTAAGATTTGTCTGGTTTTCATCAAAAAAGAATATCCAAGCTAATGTATGTGCTTCTTGGAGATTGACAGTTATTTTACATATTTTAACGATGTTAACTGCAATTTGCGCTTATTCCAGGTTCCTGATGCTAGAACCTTAGCTGTGCATGATCAGGAAAAAGAATCTGGAGCTGATGTTTTGACTGCTGCTGCTGCTCCTCCTCCTCCTCCCCCTCACCATTTGGAAAGTGAACACAAAAGGGACTCCTCAGTTGTTCCAAATGCTCCTGCTTCGTCGCCTTTTTACCATCTGTACCGTGTTCCATTTGTTCCCCGCCATCCACCCTTCAGCAGCATCGATAGGGAACTTGCTGCACCTACGCCTATGAGCATCAGCAATGCACCTTCTGTTGTGAAACCAACTGCAGTTCATTGCACATCATCAACTAATTTGAATGGGCTTGTGGGTATGACTAAACTGAACTTCTTTGAGAATGGGAACGAATCATCTTCTTCAGCACCTGTGGACATTGTTCCAAGTTCAAACAGGCATTCTGCGTTCCATAGCAGTAATTCAACCCGCGATGGCTCGGGCTCGCCCATAAATTTGAACTTGAGTCCTATCCATGCCCTCTAGAGTTTTGAAACAAACTTATCTTGATAGAAGTTTGAAATAAATTGACTTGTCTTTTCATCATCTGTTCGTTTTTGTATTGTGTTGTCTAGTTTCTTTTAAAAAGGGTATATTTCTTTTGGAACTGATTTACATGATATTTTGTTGAATACTGCTATGAGTTGATATTTTAAAGTGAGAAGTGAAAAGTTAATAGTATAACGAAGGAAGAAGACTATATAAAGTTAGTCGACGTTTTAGAGGGCTAGTCCATATTGTTGTAGTGGCATAAATCCGCCACATAAGAATCTTATCAATGGTTGTTGGCCATCTCCA

Functional annotation

Database	accession number	e-value	annotation
nr	AXF84304.1	1.1e-49	MYB1
Swissprot	Q7XC57.1	5.6e-46	Myb-related protein S3
trEMBL	A0A345D7G6	8.1e-50	MYB1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G47390.1	38.66	4e-49	191	MYBH	myb-like transcription factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G05675	AT5G47390.1	357	146	13	1	293	1	348	38.66	4e-49	191
AfisC2G05675	AT5G61620.1	170	65	6	1	151	8	176	50.00	4e-38	155
AfisC2G05675	AT1G70000.2	144	54	2	1	128	1	144	51.39	5e-34	141

Ortholog group

Species	Genes
Allium cepa	g226998.t1
Allium fistulosum	AfisC2G05675
Allium sativum	Asa0G01008.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	82	127	38.0	1.2e-09

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009414	P	response to water deprivation
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009787	P	regulation of abscisic acid-activated signaling pathway
GO:0009892	P	negative regulation of metabolic process
GO:0009908	P	flower development
GO:0010116	P	positive regulation of abscisic acid biosynthetic process
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0044444	C	cytoplasmic part
GO:0048262	P	determination of dorsal/ventral asymmetry
GO:0048523	P	negative regulation of cellular process
GO:1901001	P	negative regulation of response to salt stress
GO:1901371	P	regulation of leaf morphogenesis
GO:1905615

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network