Gene information

Detail information of AfisC2G05726

Location

Gene	Chr	Start	End	Strand
AfisC2G05726	chr2	944190585	944191432	-

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010941294.1	4.6e-31	glycine-rich protein 2
Swissprot	P27484.1	1.1e-29	Glycine-rich protein 2
trEMBL	A0A8B7CXP4	1.5e-31	glycine-rich protein 2-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G21060.1	58.54	6e-35	143	ATCSP4;ATGRP2B;GRP2B	glycine-rich protein 2B

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G05726	AT2G21060.1	205	65	2	6	210	13	197	58.54	6e-35	143
AfisC2G05726	AT4G36020.1	209	76	3	3	211	6	182	48.33	7e-34	140
AfisC2G05726	AT4G36020.1	76	33	2	136	210	225	297	51.32	3e-09	58.5

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00313.19	CSD	Domain	9	73	90.8	3.3e-26
PF00098.20	zf-CCHC	Domain	142	157	31.2	1.3e-07
PF00098.20	zf-CCHC	Domain	194	210	33.9	1.9e-08

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0001072	F	transcription antitermination factor activity, RNA binding
GO:0003690	F	double-stranded DNA binding
GO:0003697	F	single-stranded DNA binding
GO:0003729	F	mRNA binding
GO:0051087	F	chaperone binding
GO:0005739	C	mitochondrion
GO:0005829	C	cytosol
GO:0005507	F	copper ion binding
GO:0005524	F	ATP binding
GO:0005730	C	nucleolus
GO:0005794	C	Golgi apparatus
GO:0008143	F	poly(A) binding
GO:0008270	F	zinc ion binding
GO:0009269	P	response to desiccation
GO:0009631	P	cold acclimation
GO:0009651	P	response to salt stress
GO:0009737	P	response to abscisic acid
GO:0009793	P	embryo development ending in seed dormancy
GO:0009826	P	unidimensional cell growth
GO:0009845	P	seed germination
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0010501	P	RNA secondary structure unwinding
GO:0031564	P	transcription antitermination
GO:0032508	P	DNA duplex unwinding
GO:0043457	P	regulation of cellular respiration
GO:0048443	P	stamen development
GO:0060567	P	negative regulation of DNA-templated transcription, termination

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K03704	cspA; cold shock protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network