result

Gene information

Detail information of AfisC2G05770

Location

Gene	Chr	Start	End	Strand
AfisC2G05770	chr2	948851045	948854997	-

Sequences

CDS

>AfisC2G05770
ATGGGTTCGTCTGTTTCGACTCACTTTTTTACTTTCCTCATCTTCTTTCTCAATATTTACACTTCTCATGCAAACCCAGAACTAAGAGTTTTAATGGAGCTCAAATCATCACTAGACCCAAACGGCAACATTCTGTTTTCATGGCAAAATGAAGAAAACCCATGTAGTGGAAAATTCGAAGGAGTTGCATGCAATGAGCATGGCAACGTTGCAAATATTTCATTACAAGGAAAGGGCCTTTCAGGTCATTTGACTCCTGCTGTATCACAACTTACAAGTTTGTCTGGGCTTTATCTCCATTACAACGAGATTAAAGGAGAAATACCGAATGAAATTGCAAATTTGACCGAGTTGGTTGATTTGTATCTAAATGTTAATAGTTTATCAGGGAGCATTCCTTCTGAATTTGGAAACATGAACAGTCTTCAAGTTCTTCAGCTTTGCTACAATCAGCTTACAGGCAGCATACCAACACGACTCGGACTTCTAAATAATCTCAATGTTCTCGCTTTGCAATCTAATCATCTTCATGGAGCTATACCTGCGAGCTTAGGAGATTTAACTCAACTAACAAGACTTGATTTGAGTTACAATAATCTGTTTGGTTCCATTCCGACCAAGTTAGCTCAGCTTCCTCAACTTCAAGTGTTAGATCTCCGAAATAACTCTCTTTCCGGAAATGTACCTTATGAGCTTATGCGACTAAATGAAGGGTTTCAATTTAGCAACAACGCAGGTCTATGTGGATCAGGTTTCTCTACTCTCCGATTATGCACATCAGCTGATCTCATCAATTCAAATAGGCCTGAACCAATCGAGCATGATCCAAATGACTTGATTCCAACTAGCTTAACACCTCTACAAATCCCTCAATCAGCAAATCTTAGTGCACGCTGTAACACAACAAACTGCTCCAATAACTCAAAATCCTCTACATTGACTGTCATCATAGGAATCATTGGAGTTTTAGTTGCAGGTTTTCTTTCAGGTATATTAACCTTTGCATGGTACCGCCGCAAAAAACAAAAGATAGGGAGCTCACAAGAAATATCCGAAAATTGTCTAAGCATTGATCAAGCAAAGGAAGTTCCTCAGAAAAGCGCTTCTCCACTGATTAGCGTTGAATACTCTAACGGGTGGGACCCGTTAGCAGATGGAAGAAGCGGAATAGGGTTTTCGTTAGAGGTGTCTCAGAGCTTTAGATACAATTTGGAGGAGGTAGAGAGTGCTACTCAGTACTTTTCAGATGTTAATCTGCTTGGAAAGAGCAATTTTGCATCGACTTATAAAGGGATGTTGAGAGATGGCAGTGATGTTGTAATTAAGAGCATTAGCAAGTCGAGTTGCAAATCGGAGGAGGTGGAATTTTTGAAAGGGTTGAAGTCGTTGCCGGTTATTAGGCATGAAAATGTTGTTAAATTGAAAGGGTTTTGTTGTTCGAGGGGAAGAGGAGAGTGCTATCTTGTTTATGATTTTGTTGCCAATGGGAGCTTATTGCATTATTTGGACTTGAAAGCTAGTGATACTAGTAGGATGCTCAAATGGCCGGTTAGAGTTTCCATTATTAAAGGAATTGCCAAAGGAATCGAGTATTTACACGGCAATAGAACACACAAACCACCTCTAATCCACCAAAATCTCTCATCTGGAAAAATACTAATCGACGAAAACTTTGCTCCTAAAATTTCGGGGTCTGGCCTTCACAAACTTTTAGCAGACGATGTAGTATTCTCAACTCTAAAAGCAAGTGCAGCAAATGGATACTTGGCTCCAGAATACACAAGTACTGGTCGCTTCACTGAAAAAAGCGACGTATATGCATTTGGAGTCGTTCTATTTCAAATTCTTACAGGCAAAACACGTGTTGCTCACCTGAGAACTAGCGCAGAGTCTGGCCAGCTCGATAACCTTATCGATGAAAATCTTAATGGGAAGTATAGTAGGCAAGAGGCTTCCAAAATTGCGAGCATTGCACTGATATGTACTAGTGAAGTTCCAACCCAAAGACCTAAAATGGAGACTGTTGTTAAGGAGCTTGGTAGCTTTTGA

Protein

Gene

>AfisC2G05770
GAATAGAGGGAGCCTTCCTCTTTTCATACTGGACACCTTCGCTCTTTCGTGCTTCTGAAAACCCAAACTTCTATTTTTCTCAATACCACAAAAATGGGTTCGTCTGTTTCGACTCACTTTTTTACTTTCCTCATCTTCTTTCTCAATATTTACACTTCTCATGCAAACCCAGAACTAAGAGTTTTAATGGAGCTCAAATCATCACTAGACCCAAACGGCAACATTCTGTTTTCATGGCAAAATGAAGAAAACCCATGTAGTGGAAAATTCGAAGGAGTTGCATGCAATGAGCATGGCAACGTTGCAAATATTTCATTACAAGGAAAGGGCCTTTCAGGTCATTTGACTCCTGCTGTATCACAACTTACAAGTTTGTCTGGGCTTTATCTCCATTACAACGAGATTAAAGGAGAAATACCGAATGAAATTGCAAATTTGACCGAGTTGGTTGATTTGTATCTAAATGTTAATAGTTTATCAGGGAGCATTCCTTCTGAATTTGGAAACATGAACAGTCTTCAAGGTGTGATTTTGTGATTTTATTTTAGTGATTTGTGTGTGTTTGAGTTGTTTTAAGTGATAAAGTTTGGATTTTTATGTATTATACTGTTGGAAGAAGCTTCATTTAATTTTGTCATGTCTCCATAGTTTATTTGTTAGTTTTTTTAGTTTTGTTTATACTAGCTTTTACCAGATGGTAAAACTGAAAAGGTTCAAATCTTGCTTGCTGAAACTTGTAAAGATTCAAGATTTATCATTAGTTTTACACAGTTCCATTAGTATTTAATCATTGCTTGTAGTCAAATTGATTTCAAGTATGTTCTTGTACATATTTTCAAAGTGTTTACGTCTTTTGTTTTTATTCTATGTAGTTCTTCAGCTTTGCTACAATCAGCTTACAGGCAGCATACCAACACGACTCGGACTTCTAAATAATCTCAATGTTCTCGCTTTGCAATCTAATCATCTTCATGGAGCTATACCTGCGAGCTTAGGAGATTTAACTCAACTAACAAGACTTGATTTGAGTTACAATAATCTGTTTGGTTCCATTCCGACCAAGTTAGCTCAGCTTCCTCAACTTCAAGTGTTAGATCTCCGAAATAACTCTCTTTCCGGAAATGTACCTTATGGTATTTTCAACTCTATGTTGCCACTTAAATAATTTAACAGTAAATACTACCTGTAGTCCTTGGTATTTTCATTTGCATTCACTTTTTTGAATCACACTTACACATCATATTTTCAAATCAAATGTATCTTATATTTGAACCATTAAAATGACTTTGCCTTTCATGCAGAGCTTATGCGACTAAATGAAGGGTTTCAATTTAGCAACAACGCAGGTCTATGTGGATCAGGTTTCTCTACTCTCCGATTATGCACATCAGCTGATCTCATCAATTCAAATAGGCCTGAACCAATCGAGCATGATCCAAATGACTTGATTCCAACTAGCTTAACACCTCTACAAATCCCTCAATCAGCAAATCTTAGTGCACGCTGTAACACAACAAACTGCTCCAATAACTCAAAATCCTCTACATTGACTGTCATCATAGGAATCATTGGAGTTTTAGTTGCAGGTTTTCTTTCAGGTATATTAACCTTTGCATGGTACCGCCGCAAAAAACAAAAGATAGGGAGCTCACAAGAAATATCCGAAAATTGTCTAAGCATTGATCAAGCAAAGGAAGTTCCTCAGAAAAGCGCTTCTCCACTGATTAGCGTTGAATACTCTAACGGGTGGGACCCGTTAGCAGATGGAAGAAGCGGAATAGGGTTTTCGTTAGAGGTGTCTCAGAGCTTTAGATACAATTTGGAGGAGGTAGAGAGTGCTACTCAGTACTTTTCAGATGTTAATCTGCTTGGAAAGAGCAATTTTGCATCGACTTATAAAGGGATGTTGAGAGATGGCAGTGATGTTGTAATTAAGAGCATTAGCAAGTCGAGTTGCAAATCGGAGGAGGTGGAATTTTTGAAAGGGTTGAAGTCGTTGCCGGTTATTAGGCATGAAAATGTTGTTAAATTGAAAGGGTTTTGTTGTTCGAGGGGAAGAGGAGAGTGCTATCTTGTTTATGATTTTGTTGCCAATGGGAGCTTATTGCATTATTTGGACTTGAAAGCTAGTGATACTAGTAGGATGCTCAAATGGCCGGTTAGAGTTTCCATTATTAAAGGAATTGCCAAAGGTATATTATTGCACAATTTCTTTCTTTCCTAGTTAGTGCATGAATTTTTTTTTCTTGCCCTTTTATCTAGATAATAGTTGGTAGCTTGTTCCTACATGTATATTATATTCGAGAGGAATCTGCATCGCCAATTTTTTGCATCCCGGTTCATCCAAACCTTGTATAAATATGTACAATTATCGAAATTGAACCACTTTTTAAGATATGAATCATATGATCTACTTAACATCAATGTCATTTCAAAAAAAAAAAGATTGTTATGTGTTTATAATTCATCTAAATGAATTTTTTTTGATCTATCAGTTATTACTTATTAATATTATTTATTTTAACTGTTGGTTTAAACCATGTTTTTATAAGACTAGAAATATTGAAATAATCTATGTTTTTTGCAAACAAGTTATTGATTTTATGTACAAAAGGATATTTAGTTCCAAACAAACAAAGATACCAAAATAGAATTCCGGAACAAATTGGGATATTAAATTTTTTGGATGTGGGTTTCTCCTTGTATATTACCTTCAAAATGTAAATCATTTTGTTCAAAGCATTACCTTCAAAATGTAGATCACTTTGTTCAAAGCATTACCTTCAAAGTAGATCATTTTGTTGAAAGCATTACCTTCAAAATGTAGATCATTTAGTCAATGCTTAGTGATGAAAATGAAAAATGCATAGGTCCATTCCAATGGGCAATGAATTTGTTTGTCAAATAGCTTGAGTATGATTGTTTTATGATACACCTTTTTTGAAGTTTACGGATAATGTTTGGTTTGCTTGTATCTGTTTTTTTCTGAAAGAGAAATATATTTGGAATATGCATTGTGAGATTGGTGTTTATTTACTTGGACGTTCCAATTACCTGGTTATTTTTTTCATATACGAATCGTATAATAATTAATTTGGAATCATCAATGATCCCGATTTCTAACTTGTTTTGCTTCAAATTGTTATTGTAGGAATCGAGTATTTACACGGCAATAGAACACACAAACCACCTCTAATCCACCAAAATCTCTCATCTGGAAAAATACTAATCGACGAAAACTTTGCTCCTAAAATTTCGGGGTCTGGCCTTCACAAACTTTTAGCAGACGATGTAGTATTCTCAACTCTAAAAGCAAGTGCAGCAAATGGATACTTGGCTCCAGAATACACAAGTACTGGTCGCTTCACTGAAAAAAGCGACGTATATGCATTTGGAGTCGTTCTATTTCAAATTCTTACAGGCAAAACACGTGTTGCTCACCTGAGAACTAGCGCAGAGTCTGGCCAGCTCGATAACCTTATCGATGAAAATCTTAATGGGAAGTATAGTAGGCAAGAGGCTTCCAAAATTGCGAGCATTGCACTGATATGTACTAGTGAAGTTCCAACCCAAAGACCTAAAATGGAGACTGTTGTTAAGGAGCTTGGTAGCTTTTGAATGTGATATTTGGAACTACATGTTTAGGTCCTGCAGTATGTAGTGTTTGCTTTTATGTAGTATTTGGATGGTTTAGCTCTTGTCAGTTGATGTAACATAATGTAGTGGTGCAGCATGTGAACCATTTTGTCTTCTACTCTGCAGAATTTTGTATGTTGGATTGGGTTAGGGGCTGCAGATGGGATAAAAGGCGAACCTTTTGTGTTGTAGATGCATGTATTATCGTTGTTTGTATGTGGCAACTGTTGAAGTTTAATTCTAACTTTTAAGCTCTTCAATTGGCTGAATTATTTAACTGATGGTTAATGCATGTTGTCATAAGCATGAAATATTAT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020273743.1	6.0e-197	LRR receptor-like serine/threonine-protein kinase GSO2
Swissprot	Q6K4T4.1	6.0e-45	Somatic embryogenesis receptor kinase 4
trEMBL	A0A1D1Z4P6	3.3e-181	Protein NSP-INTERACTING KINASE 2 (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G51560.1	57.25	0.0	736		Leucine-rich repeat protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	bit score
AfisC2G05770	AT5G51560.1	655	268	5	27	680	31	674	57.25	736
AfisC2G05770	AT2G45340.1	668	269	11	30	679	29	684	55.24	725
AfisC2G05770	AT4G22730.1	687	309	6	1	679	1	682	53.13	721

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08263.9	LRRNT_2	Family	24	65	32.9	5.1e-08
PF13855.3	LRR_8	Repeat	165	224	36.0	4e-09
PF07714.14	Pkinase_Tyr	Domain	419	679	136.1	1.2e-39

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0004674	F	protein serine/threonine kinase activity
GO:0006468	P	protein phosphorylation
GO:0009409	P	response to cold
GO:0009556	P	microsporogenesis
GO:0009742	P	brassinosteroid mediated signaling pathway
GO:0010152	P	pollen maturation
GO:0033612	F	receptor serine/threonine kinase binding
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network