result

Gene information

Detail information of AfisC2G05814

Location

Gene	Chr	Start	End	Strand
AfisC2G05814	chr2	958074295	958077298	+

Sequences

CDS

>AfisC2G05814
ATGGAAAACAATAACAACACTCATGATCCTATTACTGAAAGGGACGATCCTTTTGCAAGTACTCTTCTCGAGCTAGCAGCAAACAACGATCTGGATGGGTTCAAACAGTCATTCAATCAAAATCCCTCTTCCGCTAATGAAATCGGACTTTGGTATGGAAGAAGAAAAGGTTGCAATCAAATGGTTTTACAACACAGAACTCCTCTAATGGTTGCAGCCACATACGGCAGTCTTGATATATTAACATTCATACTATCAACACCTGAAATCGATGTAAATAAAATATGCGGTGATGATAAAACCACGGCTTTACACTGTGCTGCATCCAGTGGCTCAGTCAATGCACTCGATGTTGTCAAACTTCTCTTATCATCTGGTGCAGATCCATCCATCGAAGATGCTAACGGGTCTCGACCCGCTGATGTAATTGTTGTCTCCCCTAAATTGGCTAACTTGAAATCATCACTAGAAGAGCTTTTGGGTAAAGAAAATTCTAATGGAAGCAATGATCATGGCACTGAAAAAAACTCTCTCCCTATGATTTCCACATCCATTTCTGTATCCGAAAGAAAAGAGTACCCTATAGACCCATCTCTTCCCGATATAAAGAACAGCATTTATGCAACAGACGAGTTCCGTATGTTCTCCTTCAAGGTCCGTCCCTGCTCCAGAGCCTACTCTCATGACTGGACCGAGTGTCCTTTTGCTCACCCAGGCGAAAATGCAAGGAGACGTGACCCTAGAAAGTACCATTACAGCTGCGTACCATGTCCAGACTTTCGTAAAGGAGCATGCAGAAGAGGAGATATGTGTGAGTATGCTCATGGAGTCTTTGAATGCTGGCTCCACCCTGCTCAGTATCGCACCAGACTATGCAAAGATGGCACCTCCTGTGATCGTAGGGTATGCTTCTTCGCACACACCAATGAAGAGCTTCGCCCCCTTTACATGTCTACTGGATCTGCTGTACCATCTCCTCGATCCACTGCTTTGGAAATGGCTGCCGCCATGGGACTGATGCCTGGGTCTCCTTCCTCCTTCACTCCACCTATGTCTCCTGTAGCCCCAGCTAACAATGGCCATGGACTTAACTGGCCTCAGCCCAATGTGCCTACTTTGAATCTGCCTCAGTCTAGCAGGCTAAGATCGTCTTTGAGTGCACGCGACATAGACGACTATTCTATGATGCAGGAGCAGTTGATCAATGATCTGTGTTTGTCCAGGCTTGGTTCTAGTTCTAATCGTGGGACGCCGAGGTCGATGAATCTGACTCCAGCAAACCTGGATGAGTTGTTTTCTGCTGAGCTTTCATTGTCTCCTAGGTATAATTCTGAACAAGGAGCAATGTTTTCTCCTTCTCATAGAAGTGCATTATTGAACCAGTTTCAGCAGCAGCAGCAGATGCTTTCTCCTATCAATACCATGCAGCAGGCTTCACGTGTTATATCTTCACCTGGACGGATGTCTCCTAGGAGCGTGGAGCCTATAAGTCCGATGAACTCTAGACTTGCTCAAATATCACAGAGAGAGAAGCAGCAGCAGAGTTTGCGTAGTTTGAGTTCACGTGATTTGGGTGCAAACAGTTCTATCAGTTCCTCTTGGTCGAAATGGGGGGCAGCTTCTGGAACTTTAGATTGGGGTGTCAATGGCGAAGAGCTTGGTCAGCTGAGGAGGTCTTCTTCTTTTGAAATGAAGACAGGTGGTGAAGAGCCTGACCTCTCCTGGGTTCAGTCATTGGTTAAAGAGTCACCTCCTGAAAAAGTTATTGCCGCCGCTGCCATGGCTGCTTCTAGCAATGAAGGAGATTTGGACGAGAATGAGAACGATCAGGATGCTGCTCTGGGGCTTATTTGGCGAAGGTGA

Protein

Gene

>AfisC2G05814
GTTCAAACAAAGATATTCAATTGGCTAATATCACAAAGCCCCCTTCATTTCATCTCCAAGAATATAATAACAATAAAGAGCTCAGAAGCTCAGAGGTTTTAACTTTTAACCTCTCATCAATTCCTCAAGAATCCGTATAACATCAGTGGTTTTATCGGTGTAAGATTTGCGATCTACTATCGGATCAACCACTTTTCTACCATCGCTGGATATTTTGAGCTTCTGAAGATTGTTAGTATTTCAGTCATCCATTAAATCGGTGAGTTATTTATTTCAAATTTTATTTTGTTAATTTTTGTAGTTTGTATAGAAGATTTTGGCCCCAAAATCCAATCTTTTGGGCAAATATGACAAGTTTAGTAGAATTGATGATTTTTCGCCTAATATCTCGTACTGTGTAGCTCACGATTCGCTACAAATATGGACTTTAATCTTGACAAATATATATGTTTACGGTAATAATTGCCATATTTAGCGGTTATTCCAATCTATTTTTGCGATTTATCTAGTATACCGTTTTTTCATTCTTATTTCCACATCTGGATTAAAGAAGTAACAAATTTATTTTATAGGTAAAGCAATTGTCGTGGTCAATAACACTTCAAATCTTCATCGTTATCTCAAACAATGGAAAACAATAACAACACTCATGATCCTATTACTGAAAGGGACGATCCTTTTGCAAGTACTCTTCTCGAGCTAGCAGCAAACAACGATCTGGATGGGTTCAAACAGTCATTCAATCAAAATCCCTCTTCCGCTAATGAAATCGGACTTTGGTATGGAAGAAGAAAAGGTTGCAATCAAATGGTTTTACAACACAGAACTCCTCTAATGGTTGCAGCCACATACGGCAGTCTTGATATATTAACATTCATACTATCAACACCTGAAATCGATGTAAATAAAATATGCGGTGATGATAAAACCACGGCTTTACACTGTGCTGCATCCAGTGGCTCAGTCAATGCACTCGATGTTGTCAAACTTCTCTTATCATCTGGTGCAGATCCATCCATCGAAGATGCTAACGGGTCTCGACCCGCTGATGTAATTGTTGTCTCCCCTAAATTGGCTAACTTGAAATCATCACTAGAAGAGCTTTTGGGTAAAGAAAATTCTAATGGAAGCAATGATCATGGCACTGAAAAAAACTCTCTCCCTATGATTTCCACATCCATTTCTGTATCCGAAAGAAAAGAGTACCCTATAGACCCATCTCTTCCCGATATAAAGAACAGCATTTATGCAACAGACGAGTTCCGTATGTTCTCCTTCAAGGTCCGTCCCTGCTCCAGAGCCTACTCTCATGACTGGACCGAGTGTCCTTTTGCTCACCCAGGCGAAAATGCAAGGAGACGTGACCCTAGAAAGTACCATTACAGCTGCGTACCATGTCCAGACTTTCGTAAAGGAGCATGCAGAAGAGGAGATATGTGTGAGTATGCTCATGGAGTCTTTGAATGCTGGCTCCACCCTGCTCAGTATCGCACCAGACTATGCAAAGATGGCACCTCCTGTGATCGTAGGGTATGCTTCTTCGCACACACCAATGAAGAGCTTCGCCCCCTTTACATGTCTACTGGATCTGCTGTACCATCTCCTCGATCCACTGCTTTGGAAATGGCTGCCGCCATGGGACTGATGCCTGGGTCTCCTTCCTCCTTCACTCCACCTATGTCTCCTGTAGCCCCAGCTAACAATGGCCATGGACTTAACTGGCCTCAGCCCAATGTGCCTACTTTGAATCTGCCTCAGTCTAGCAGGCTAAGATCGTCTTTGAGTGCACGCGACATAGACGACTATTCTATGATGCAGGAGCAGTTGATCAATGATCTGTGTTTGTCCAGGCTTGGTTCTAGTTCTAATCGTGGGACGCCGAGGTCGATGAATCTGACTCCAGCAAACCTGGATGAGTTGTTTTCTGCTGAGCTTTCATTGTCTCCTAGGTATAATTCTGAACAAGGAGCAATGTTTTCTCCTTCTCATAGAAGTGCATTATTGAACCAGTTTCAGCAGCAGCAGCAGATGCTTTCTCCTATCAATACCATGCAGCAGGCTTCACGTGTTATATCTTCACCTGGACGGATGTCTCCTAGGAGCGTGGAGCCTATAAGTCCGATGAACTCTAGACTTGCTCAAATATCACAGAGAGAGAAGCAGCAGCAGAGTTTGCGTAGTTTGAGTTCACGTGATTTGGGTGCAAACAGTTCTATCAGTTCCTCTTGGTCGAAATGGGGGGCAGCTTCTGGAACTTTAGATTGGGGTGTCAATGGCGAAGAGCTTGGTCAGCTGAGGAGGTCTTCTTCTTTTGAAATGAAGACAGGTGGTGAAGAGCCTGACCTCTCCTGGGTTCAGTCATTGGTTAAAGAGTCACCTCCTGAAAAAGTTATTGCCGCCGCTGCCATGGCTGCTTCTAGCAATGAAGGAGATTTGGACGAGAATGAGAACGATCAGGATGCTGCTCTGGGGCTTATTTGGCGAAGGTGAAGTCAAAATTTTAGAGTTTGGTAAATAGTAATTCTTTTGATTAGTCGAAGAGAAATCTTTCAAAACAGTTTTATTAATTACTATTACTAGTACTGCAAGAGTTCAGGTAACATGGCAGGAGTTTGTCTGGGTTGTTTCAAGAACTACCTGGGTGCATTGCTTCTCCGATATCTTTTATTAATATTTTTTTGGTCTGAAATTTTTTGGGGGGTAAACTCTCTTAAAATGTGGACTATATGTTTCTTTGCTTTGAAATCTGTCTAGATGTTTTGTTTTTTTGACATTAATCTCCCTTTTGTCGCCTTTGATTCTTTACCATTTTTTGGTGAAGTTTTCCATGTTGCAATGGTGGAGTTTTAGAATTTCAGATGCTTTACTTAGCTATTCTATTATGGGAGATATATCTAATGGGATCAATTAGATCTCTGTATTTTGTAATGGTGGAACAACATATTATTTGTTATTTGTTTAATTTATGATTCTTTATGAACTCTATTGAATGCTTCCTTCTTTT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020257981.1	8.6e-219	LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 24-like
Swissprot	Q10EL1.1	5.4e-202	Zinc finger CCCH domain-containing protein 24
trEMBL	A0A8B7BJF9	3.5e-214	zinc finger CCCH domain-containing protein 24-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G41900.1	55.57	0.0	663	OXS2;TZF7	CCCH-type zinc finger protein with ARM repeat domain

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G05814	AT2G41900.1	673	209	19	1	602	28	681	55.57	0.0	663
AfisC2G05814	AT5G12850.1	637	206	20	20	583	40	657	53.22	3e-175	612
AfisC2G05814	AT5G58620.1	619	274	16	20	600	12	601	44.91	5e-134	475

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF12796.4	Ank_2	Repeat	59	133	43.3	3.7e-11
PF00642.21	zf-CCCH	Family	256	276	22.9	5.4e-05

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0000932	C	cytoplasmic mRNA processing body
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003727	F	single-stranded RNA binding
GO:0050832	P	defense response to fungus
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006979	P	response to oxidative stress
GO:0008270	F	zinc ion binding
GO:0009409	P	response to cold
GO:0009793	P	embryo development ending in seed dormancy
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0010150	P	leaf senescence
GO:0010187	P	negative regulation of seed germination
GO:0010200	P	response to chitin
GO:0010494	C	cytoplasmic stress granule
GO:0061157	P	mRNA destabilization

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network