result

Gene information

Detail information of AfisC2G05818

Location

Gene	Chr	Start	End	Strand
AfisC2G05818	chr2	958930574	958932807	-

Sequences

CDS

Protein

Gene

>AfisC2G05818
ATGAAGAACAATAGTTGCATGGAGAATGTGAAGCTAAGGAAAGGGTTGTGGTCTCCTGAAGAAGATGAGAAGTTGATGAGTTATATGATGAGTAATGGACAAGGATGTTGGACTGATGTGGCCAGGAATGCAGGCTTGCAGAGGTGTGGCAAGAGTTGCCGTCTTCGATGGATCAATTATCTGAGACCTGATCTTAAGCGTGGTGCCTTTTCGCCTCAAGAAGAGGAGCTCATTGTTCAGTTGCATTCCATCCTTGGTAACAGGTTTGTCTTTACCTTATAGTTATATCATATTTGTAAATGCTTATTTTTGTGAATGAATTTCAGTGTTTGAAATTGACTATTTCTGGTCGAAAATCCAATGTATACCCACAACCATTCATTAATTAGTAACAAGTCAAAAGTTAATGGTTTAGATTTTGTACAGCTGGTTAAAGAGGTGAATAGACCGTCTGAAAGTTCAAGGATATGTGTATTCCGGCGCACTTATTGTTTTTGTTTTCTTTTCTATCTAAAACAAACCAATGTTTTCATAGTCAAGAATCACTTGCTCATCAGTAAGAATAAATTGCACAAATGAAGCAATTTTGATTAGAAAGAATACATTGAACAACTGTGGTTCATCCAAAAAAATTGACAGAATAATTACTTACAAATTGCCTCATCCTTCCTTCAATAATTAATATGCAAATTTGGTATTTTTTGAAAGAAAAAAACATCTCTAATATTCATACACGAACAGCGCACATCACTACTACATGACTACGTGAAATGCCATATGAATTGCAAGGTCTAATAGCAACTTTAAAATGCACTAGGCAATTGATTTTTAAAATACATATCGTTTTGAAAGACTGCATGTTCACTATGTCGAATCTGAGTTATCATAATTATCGTTTTTTATAGATCAGAAAACCTATTCTTAAGTTAAAGCTCCCAATTTTTGTTCACTATGTATAATCTGAGTTATCATAATTATCGTTTTTTATAGATCAGAAAACCTATTCTTAAGTTAAAGCTCCCAATTTTCATTTGGTCTTCAGGGATGAGAAGTTTTTAAGTAGAATATAAAGGCTTTTTCTGAATATTTTCATTTAATTACTTTAAATATGTTGTACACAGATGGTCTCAAATCGCTGCAAGACTGCCTGGACGTACTGACAATGAAATAAAAAACTTCTGGAATTCAACCATAAAGAAAAGGCTCAAGAATTCATCCTTAACTTCCTTAAACAACAACGACCAATATTCACCGAATGATCAAAAAGATAATATTCTTGGAACATTCGTAAACTCAAACGATACTATGCACATCGGTAATTCATCAACATCCTCAACATCTTCTATGCAACAATTTCGGTTGAACAACAATAATCAATATGACTTGTTTCCTTTGCCCGACACAACAACATATGGCTACTTCAACATACCAATATCGTTAGAGCAAGAACGAGATTTTTATGGAAGTATAAACTGTGGGGTTGGAAGTGAGTTATATGTGCCTCCCTTGGAGTATACAAGTGTAGAAGAGAAGGTATTATTGCAAAATAATCACAGCAATGAGTACATCAACCACAACAATAATCATATTAATGATAATGATATCAATGTCAATGTGAATAAAAATTGTGGCAATGTGGTGGAAGAAAGTGGAAATTATTGGGAAGGTGATAGAGATGCATGGGATTTGGGAGATTTGATTGAAGATGTCTCATCCTCATTTCCTTTCCTTGATTTTCAAGTTGAATGAATGATCATCACTCACCATTTCTATCTATTGTCGGCATGGATATTATAATCCCTGAATTCTTCCCTTTTTCCGTGTTATGCACAAAAATGAAAGGTTAGGAAAACAGAATTTGCTTACCACCCATTGATTATTTTGTAGGTTAAAAGTACATACCCAAAGCATTAAACACACAAAAGTCATTTCTTTCTATTCTCCATGCAATTTTATCAAACGTTGCTTAAAAAAAGCAAGGCAATGATGATTGTGACAGTGCAAAAGTTCCCTATCCTATTTTCTCTTTTCTCCTTCCCTTGCTTCTTAAGTCAAGCTATATAGTGTGCATGTTATGATGGGGTCAAGTGTCTATTTATTTGGTTGTAAGATGAAGATTCTCTTCTTATGTTCCTGTAAAGGTTGTAATCAGAGTTGTTACAAAACTGTAAAATAGTGATAAAAATATATGTGTACAAATGATCGTGGAGGTTAGAATTGTATCAAATACATAC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020244521.1	3.2e-70	transcription factor MYB46-like
Swissprot	Q9LXV2.1	2.5e-56	Myb-related protein 46
trEMBL	A0A8B8ZS53	1.3e-65	transcription factor MYB83-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G12870.1	48.52	6e-59	224	ATMYB46;MYB46	myb domain protein 46

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G05818	AT5G12870.1	305	85	11	11	290	17	274	48.52	6e-59	224
AfisC2G05818	AT3G08500.1	334	147	7	3	296	18	343	41.62	2e-58	222
AfisC2G05818	AT1G09540.1	117	29	0	1	117	1	117	75.21	6e-52	201

Ortholog group

Species	Genes
Allium cepa	g177526.t1
Allium fistulosum	AfisC2G05818
Allium sativum	Asa6G03366.1; Asa6G03375.1
Arabidopsis thaliana	AT5G12870.1
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	14	61	50.9	1.2e-13
PF00249.28	Myb_DNA-binding	Domain	67	110	56.4	2.2e-15

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0001944	P	vasculature development
GO:0050832	P	defense response to fungus
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009800	P	cinnamic acid biosynthetic process
GO:0009901	P	anther dehiscence
GO:0010089	P	xylem development
GO:0010119	P	regulation of stomatal movement
GO:0010214	P	seed coat development
GO:0010224	P	response to UV-B
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0030154	P	cell differentiation
GO:0043565	F	sequence-specific DNA binding
GO:0048364	P	root development
GO:1900384	P	regulation of flavonol biosynthetic process
GO:1901348	P	positive regulation of secondary cell wall biogenesis
GO:1903086	P	negative regulation of sinapate ester biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network