result

Gene information

Detail information of AfisC2G05852

Location

Gene	Chr	Start	End	Strand
AfisC2G05852	chr2	963555861	963559408	-

Sequences

CDS

>AfisC2G05852
ATGCCTGCTCAAGCTAACAACAAATCGATGCAAACATCAAAGCGCTACAAAACCAACCTCAATCACATCCATATGAAAGAATCAAAATCCCAATTAGTTCCTCAAACCTACAATTCATCAACTCCCTTCAGTTCCGATAGCATCTCCCATCAACTCAAACATGCTTCACCTCCAAACTACACACTTGAGTCATCATCAACAACTTACAACTCTCCATCAACAACAATAAGTGTTTCTCCAACTAGCCAAAGTCCCGTATCGTACGATTCACCAGTTAGTGCATCATGCATAACCGATGGCCCTAATGAGCTACAACAAAAATTAAGAGAGCTCGAGACTATAGTGTTCGGTGCTGAACTAAACTGCCAAGTCGATACCATGAGTAATCTATCGCTAGAGCAAGAAGATTGGATGCAAATGCTGGGAATTCCTCAAGGTGATTTGAAACAAGTGCTCTTAGCTTGTGCTCAAGCTGTAGACGAAAATGAGATTGCATCAGCAGAGTGGTTGATAGCGCAGTTGCGACCTATGGTTTCTGTTTCTGGTGAACCGATTCAGAGAGTGGGGGCTTATATGCTAGAAGCACTAGTTGCTAGGCTAGCTTCGTCGGGAAGTTCTATATATAAAATTTTGAAGTGCAAAGAGCCTGCAAGTTCCGACCTCCTCTCTTACATGCATTTGCTGTACGAGGCATGCCCTTATTTTAAGTTTGGGTATCTTTCAGCCAATGGTGCTATAGCAGAAGCTTTTAAAGGCGAGGACAGAGTTCACATCATTGACTTCATGATTGCTCAAGGCACTCAATGGGTGACTCTCATCAGGGCTCTCGCTGAAATGCCTGGTGGGCCTCCACATGTTAGAATTACCGGCATAGACGATTCCCTCTCTGCTTATGCTAGGGGAGGTGGCTTGAATATCGTGGGTCAGAGATTGACTCAGTTTGCAAAATCGTGTGGAGTTTCTTTAGAATTTCATCCTGCAATCATATCGGGATCTGAAATCGACCCTCCTGATCTCTATGTTCAACCTGGGGAAGCATTAGCTGTGAACTTCGCTTTTCAACTTCATCATATATCAGATGAGAGTGTGAGTACAACGAATCATCGTGACACTATTTTGAGGCTTGTGAAGAATCTGTCTCCTAAGGTTGTTACTTTGGTAGAGCAAGAATCTAATACAAACACTGCTCCATTTTATTCGAGGTTTGTTGAAACTTTGAGCTACTACACTGCTATTTTTGAATCGATAGATGTGACTCTTCCGAGAGACAACAAGGAAAGAATCAACGTGGAGCAGCATTGTTTGGCAAGGGATATGGTCAATATAATTGCTTGTGAAGGGGCTGAAAGAGTTGAAAGGCACGAGCTTTTTGGGAAATGGAAATCTAGGTTTATGATGGCTGGATTTACACCTGTGCCTCTAAGTCCGTCGGTGAATGCTACTATAAGCTCACTGCTTGCAAACTACTCGGATAAGTTCAGGCTTGAAGAGAGAGATGGCGTTCTTTATTTAGGCTGGATGAATAGAGCCTTGGTTGTATCTTGTGCATGGAGATGA

Protein

Gene

>AfisC2G05852
TAAATATCATAATTGTTCTTCCGATTAAATACTCGTCTATGAAACTCCTCTTCTTTTCTCTCCTTTCATTCATTCGACTTCTCCTGTTCTTCACTGAAAAAAACCGTGGTAGGAGATTACAATAAGATCATTTGCAGGTATGTGATTATTTGATTTTCGAGTTTACTATTGTTAGTTGATTTATGATATTGTTTCGTCTCATCTGCTCCTAATATTCGCGTTTTAGTTGCGTATTTCAGGGAATTTTAATTTTAGGAGTTTTTAGACTAATTATCTTTTTTTTAATTCGGTTTATCCCATCCTTGGCCAAAAGTATCTCGAAATTTTGAGGTTAATCGCCGGTGGAATGTTTGTTGCCTTCGTGGTTGGCGCTATTGTAACCAAATATGGTAATTCCCTAACCGGAATTTGCTTGTGTAGTTATAATTGTTTACTTGTTGATGTTAATCTGTAAAATTATAGGTTTGTAGTGGTGGATCTGTTCAACTCGAATTCAGGGAAGGCACACGGAAGTTGTATTAACTTCAAAATAAGTTTTAAGAGTTGAAATATTGAGCAATTTCGAGAATAAGGCTCTGTTTGTTTTGCTATTAAAAAGGCTGAATAATTACAGTGATAAGTGGTTTGTAGGTTGTTTGTTTAAAAAAGTAGCGCTGATTGTTAGCTTCTATTCAGCAAAATCAATCAGCAATTTTTATTTTTTTGCTTGTTGGGAGAGCTGATTGCTCGTTGGAGTGGTTTCTCGATAATGCCTTTTCAAACATAATAGATTTTTTTCACTCTTTGTTTTTATCCATTGCTTTCATTTATATTTAATATTATTCAAACAATTTGATTACGTCAAACTCAGGATTAATTTTCATCTCAACTCAATCTTTTCTGGGTCCAACTAAACTTTTATCATCTGGTTTTGATTTTAGTTTTCCTTTTAAGTAATTTTTTCCATCACTGAAAATCAATATAAAAAATTCGCACAAAGTAAAAAGTGCTTCGTGATGCCTACAATTAATTTTTGAACAAAAATGTGATAACTATCAAGCTTATTATTAAGAATGAAAAATACATTTAACTTTGAAATATAATGTGTAAACGAATCCAAATATATAAACAAATAAATAATTTGGAAAACTAAATAAAAATATGGAACATCTTTTGTGTTAGAATGAAAATAAACTTTGGTTTTCACCCTTAAATTTGGCAAAGGAAAAATATAATAAAATATGTGATTTGTACGATAATTGTGTCAAAGAGTAATCAATACTAGTCAAAAAGAGTAATCGATATTAACAAGGAAGAGTAATGCCGTCGAAATAATCATTTATGTCAATAAAAAAGTTTATAATCAGATACAAACAAACAAAATTTTCAGCATTCAGCAATCACAACATTTTAAACAAACGCAGCTAAATCATTTTAAACAAATGCAGCTAAATCTTTTTATGATTACTATTGATGTGAAATTGATTCTACATGTTAACTAATGGTCAAATTTCCCTGTAAATTGTCAGTTTTAGCACTGTTTATTTCATTTACAATTATAACTTGTATCGGAGTTTTAATATTATTGTAATTACTAATTACTAATTAATCATATCTTATAAGCATGGATGGACTATAACAAAGTTCTTTAGTCCGACAGAAAATGAAGCATGTAGCAATTAAGTGTAACATTACTGTGAGTTAATACTCTCACCTTGCCAAATTATCATCAGAATTTAATATTTCAACATCACTTACATTAGCTATATTAGCTCCATATGTCTGCTAAGTTTTGCATACTACTTGTGGTGTGTTACATGAAGTTGCTAGTTGCAATCTCACGAATGCGAATGATATTTTCTTTCTTTATTCACTGCTTATAAGTCTTTTTTTGAAAGTTGATATTGTTACGATGATTCAGTGTGCCTATGCCCTTTTTTGTGGTAGATTTCAATAACGACTAAATGAAATCAGAATGGGAAGCAGTTTAATCTAAATTCATCCAGGAACCCATGCCTGCTCAAGCTAACAACAAATCGATGCAAACATCAAAGCGCTACAAAACCAACCTCAATCACATCCATATGAAAGAATCAAAATCCCAATTAGTTCCTCAAACCTACAATTCATCAACTCCCTTCAGTTCCGATAGCATCTCCCATCAACTCAAACATGCTTCACCTCCAAACTACACACTTGAGTCATCATCAACAACTTACAACTCTCCATCAACAACAATAAGTGTTTCTCCAACTAGCCAAAGTCCCGTATCGTACGATTCACCAGTTAGTGCATCATGCATAACCGATGGCCCTAATGAGCTACAACAAAAATTAAGAGAGCTCGAGACTATAGTGTTCGGTGCTGAACTAAACTGCCAAGTCGATACCATGAGTAATCTATCGCTAGAGCAAGAAGATTGGATGCAAATGCTGGGAATTCCTCAAGGTGATTTGAAACAAGTGCTCTTAGCTTGTGCTCAAGCTGTAGACGAAAATGAGATTGCATCAGCAGAGTGGTTGATAGCGCAGTTGCGACCTATGGTTTCTGTTTCTGGTGAACCGATTCAGAGAGTGGGGGCTTATATGCTAGAAGCACTAGTTGCTAGGCTAGCTTCGTCGGGAAGTTCTATATATAAAATTTTGAAGTGCAAAGAGCCTGCAAGTTCCGACCTCCTCTCTTACATGCATTTGCTGTACGAGGCATGCCCTTATTTTAAGTTTGGGTATCTTTCAGCCAATGGTGCTATAGCAGAAGCTTTTAAAGGCGAGGACAGAGTTCACATCATTGACTTCATGATTGCTCAAGGCACTCAATGGGTGACTCTCATCAGGGCTCTCGCTGAAATGCCTGGTGGGCCTCCACATGTTAGAATTACCGGCATAGACGATTCCCTCTCTGCTTATGCTAGGGGAGGTGGCTTGAATATCGTGGGTCAGAGATTGACTCAGTTTGCAAAATCGTGTGGAGTTTCTTTAGAATTTCATCCTGCAATCATATCGGGATCTGAAATCGACCCTCCTGATCTCTATGTTCAACCTGGGGAAGCATTAGCTGTGAACTTCGCTTTTCAACTTCATCATATATCAGATGAGAGTGTGAGTACAACGAATCATCGTGACACTATTTTGAGGCTTGTGAAGAATCTGTCTCCTAAGGTTGTTACTTTGGTAGAGCAAGAATCTAATACAAACACTGCTCCATTTTATTCGAGGTTTGTTGAAACTTTGAGCTACTACACTGCTATTTTTGAATCGATAGATGTGACTCTTCCGAGAGACAACAAGGAAAGAATCAACGTGGAGCAGCATTGTTTGGCAAGGGATATGGTCAATATAATTGCTTGTGAAGGGGCTGAAAGAGTTGAAAGGCACGAGCTTTTTGGGAAATGGAAATCTAGGTTTATGATGGCTGGATTTACACCTGTGCCTCTAAGTCCGTCGGTGAATGCTACTATAAGCTCACTGCTTGCAAACTACTCGGATAAGTTCAGGCTTGAAGAGAGAGATGGCGTTCTTTATTTAGGCTGGATGAATAGAGCCTTGGTTGTATCTTGTGCATGGAGATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020241387.1	2.2e-212	scarecrow-like protein 21
Swissprot	Q8GVE1.1	2.9e-172	Chitin-inducible gibberellin-responsive protein 2
trEMBL	A0A8B9AJA6	2.4e-192	chitin-inducible gibberellin-responsive protein 2-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G48150.1	63.93	1e-170	596	PAT1	GRAS family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G05852	AT5G48150.2	463	152	5	70	518	29	490	63.93	1e-170	596
AfisC2G05852	AT5G48150.1	463	152	5	70	518	29	490	63.93	1e-170	596
AfisC2G05852	AT1G50600.1	436	162	2	89	518	162	597	61.47	5e-158	554

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	148	518	451.2	2.4e-135

Gene Ontology

Accession	Ontology	Name
GO:0000162	P	tryptophan biosynthetic process
GO:0005515	F	protein binding
GO:0000290	P	deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000932	C	cytoplasmic mRNA processing body
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003729	F	mRNA binding
GO:0004048	F	anthranilate phosphoribosyltransferase activity
GO:0005829	C	cytosol
GO:0004871	F	signal transducer activity
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009570	C	chloroplast stroma
GO:0009640	P	photomorphogenesis
GO:0009723	P	response to ethylene
GO:0009737	P	response to abscisic acid
GO:0009863	P	salicylic acid mediated signaling pathway
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0009938	P	negative regulation of gibberellic acid mediated signaling pathway
GO:0009941	C	chloroplast envelope
GO:0033962	P	cytoplasmic mRNA processing body assembly
GO:0042538	P	hyperosmotic salinity response
GO:0043565	F	sequence-specific DNA binding
GO:0045087	P	innate immune response
GO:2000377	P	regulation of reactive oxygen species metabolic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14494	DELLA; DELLA protein	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network