result

Gene information

Detail information of AfisC2G05935

Location

Gene	Chr	Start	End	Strand
AfisC2G05935	chr2	974516907	974523108	+

Sequences

CDS

>AfisC2G05935
ATGGTCAATCCTGTAAATGCATCTCCTAAGTCAGTTTTGAATGAAGGGGATGATTCAAAGGAAGAAACGAAGCAGGAATCTCTGATCAGTTCAGGACTTAGTAACAAAACCATCTGCAACAAGAATGTAGCTCTTGCTATCGAGCTTGAAACAAAGAATGAGGATGCTTCACTTGTTTCCATGAAAATTGTTAAAGAAGAAGAGAAGTCAGTGATGGAGCATGCTAAAGAAGAGACTCAGATCAACTTGGACCCAGATTCTAACGCTAATAAACTGGATGAGTTGCTTTCACAAGCTCAACTTTACTCCAAGTTTTTGCTTGAAAAAATGGATGACATCACTATGAATGCTTCTAGAGTCATGAATGAGCAGGAAGAAGAAAATACTTGCACTGTGAAGAGGGGTAGGAAAAGGAAGGCCAGCAAATGCATTTCCAGCTACAATACCAGAAATGCAAAGACAGCAGTCACAGCCATGCTAACAAGTTCTCATGAAGTTATTGCACCCGAAGATGTTTGTTTGACAGAAGAGGAGAGAACTGCTAAAGAACAGGCTAAACTTGTTCCAACGATGACTGGGGGACAGTTAAAGACATATCAAATCAAAGGCGTGAAGTGGATGATTTCATTATGGCAAAATGGACTTAACGGGATACTAGCAGATCAGATGGGTCTTGGTAAAACGATTCAGACTATTGGATTTATTGCACATCTCAAAAGTAATTGCATTGATGGACCATATATGATTGTTGCTCCGTTATCTACTTTATCAAACTGGGCTAGTGAATTCAATAGGTTTGTACCAACTATTGAAGTAATCATATACCATGGAAGCAAAGGGGAGAGAAGGGAAATGCAAAAGAAGTTAATGCCTAAAACCATTGGTCCTAATTTTCCCATCATAATCACTTCCTATGAGGTGGTACTAAATGATGCACGATCATTAGCTCACTATAGATGGAAGTATGTTGTCGTGGATGAGGGACATCGATTAAAAAATAAGAATTGCATCTTGTTGAGGGAAATGAGACGCTTGCCAATTGAAAATAAGCTTCTTCTGACCGGGACACCTCTGCAAAACAACTTATCAGAGCTTTGGTCAATGTTGCATTTCATTTTGCCAGACATTTTTTCCTCCCATACCGAGTTCGAATCCTGGTTTGATCTGTCAGGGAGATGCAATAGTGACTCTCAACGCGAAGATTCCGAAGAAAGTAGAAATGTTCAGGTGGTATCAAAGTTACATTCAGTTCTTCGTCCATTTCTTTTACGACGTATAAAGCTAGATGTTGAGCAGAACCTTCCAAGAAAGAAAGAAATTATAATATACGTCAATATGACTGATTATCAAAAGAACATCCAAAATCGTTTACTCAACAGGACACTTGAAAGTTATTTTATCAAAGAGTATTCAACTTATGGTATACCTCCTACAAGGCAAATGAAAGGAAAGCTGAACAGTTTGTTCATTCAACTTAGAAAAAACTGCAACCATCCTGATCTCATAGAATATCAGTATGATGGATCATATTTTTATCCACCAGTCAATCAATTAGTTGAACAGTGTGGCAAGCTCCAATTGCTGGACAGATTGGTGAATTCGCTACTTGCTAGGAAACACAAAATTTTAGTGTTTTCGCAATGGACCAAAGTTCTAGACATACTTGATCACTTCTTTGCCGAGAAGGGTCTTGAAGCTTGCAGACTTGATGGCGGTGTTAAGTTGGCTGAAAGGAAAAGACAGATCGATGAGTTCAATGACTTGAACAGCAGTATCAGTGTATTTCTTCTTAGTACCCGAGCTGGTGGGTTGGGTATTAATCTTACTGCTGCCGATACATGCATTATCTACGATAGTGACTGGAATCCTCAAATGGATTTGCAAGCAATGGATAGATGTCATAGGATAGGGCAAACTCGCCCAGTGCACGTATACAGGCTTGCAACTTCTCACACTGTTGAGGGGCGAATCATCAAGAGAGCACTTGGAAAACTGAAATTAGAACATGTGGTAATCACCGAAGGGCAGTTTCAGCAAGACAAGTTGAAGAATTCCTTAGATGAAGCAGAACTTCTAGCAATGCTTAAAGATGAAGAAAATCCAGAAGAAAAACTGACACAAATGGATATAAGTGATGCTGATTTGGTTAGAGTGATGGATCGCAGTGACTTGATGCCTGATGTTGAAGCTAGTTGCGATCTACCTCTGCGAGGTCCGGGGTGGGAAGTTATAATTCCAACTCAGAGTAGCAGTGGTGTTCTCTCTTCAATCCACGACTAA

Protein

Gene

>AfisC2G05935
TCTTCTCATAAAAATCGAATTAATTCATCTTCTTCTTTTTTCTTTTTCTAAACAAAAGTTGGGAACAAAATGGTCAATCCTGTAAATGCATCTCCTAAGTCAGTTTTGAATGAAGGGGTAACATTAAGATTCAAGTATTTTTATAGTATTGAAACATAGTTAATGTAATTTGTTACGGGATTTCTGTTCTTGCTTTTATATCTACGGTTTTAAATTGGATTAGTTAATTTTAAAGATTTTATGATTGTAGATTGCAGGTTTACTCATTTGGGACCCTCGTTAACTTACTACAGTTTACCCCCAATGTTCTTGGGTTAGGTTTTTAATTTTCCCGCCATTATTTCATCATATCTCAACTTTAGTTGGCTAAGATTGAATCTTTATTTGATTGAATCGAATCTACAATCGTTGTTCACCCTTTTTGTAGCGAATGATTAGATCTTTACTTGTTTATTAATTTTAGTGGTATAAGGAATCCGGAGACTTAGATTTTGTACTCGTGATGTAAATGCTTAAATCTTAGTCGTTTTGAACTAGAGTTTCCATCTTATATTATGTCTCACCAGTCAATAATTGTCGATTTAAACATTGAAGCGCCTTAAGCGTATGATTTTGATGAGAAACGGGTTAGGTTTGTAGCTCAGTATGAAATGATAGTAATATATTAAAAACTTCCTGTGAATTTGTGAAACTATAACAAATTAAAGCGATCAAACACTCTGTACTGATCTTAGTTTTCAAACATTGTGCCAGGATGATTCAAAGGAAGAAACGAAGCAGGAATCTCTGATCAGTTCAGGACTTAGTAACAAAACCATCTGCAACAAGAATGTAGCTCTTGCTATCGAGCTTGAAACAAAGAATGAGGATGCTTCACTTGTTTCCATGAAAATTGTTAAAGAAGAAGAGAAGTCAGTGATGGAGCATGCTAAAGAAGAGACTCAGATCAACTTGGACCCAGATTCTAACGCTAATAAACTGGATGAGTTGCTTTCACAAGCTCAACTTTACTCCAAGTTTTTGCTTGAAAAAATGGATGACATCACTATGGTATATTTACTGCTTTTATCAACACCAGTTAGTTGCTTTGGTAAACCGTAGAGAACTCTTTTATTTCGCAATAATTCACATGAAGCTCATAAGTTGAGAATATTTGACAGCATTAACTCTGCAAATTTGGCATTATGCTGATCAGTGATTGTTTATGGCTTACCCCCTTCTAATTTTGTAGAAGCATTCTGGTTGCCAAAAAATAATGTGATCAATGCATAATAAAGCTAATTGTGTCACCCTAGGAAAACCTATTTGATATCTCCATGTTTTTAAGCTTAATCTGAAATTATTTTGAGCTACAATAGACTTATTTTTCTTTACTCGTCCTATAATTTAATTTTGACGCTTTTCTTGGCTAAGCAGAATGCTTCTAGAGTCATGAATGAGCAGGAAGAAGAAAATACTTGCACTGTGAAGAGGGGTAGGAAAAGGAAGGCCAGCAAATGCATTTCCAGCTACAATACCGTGAGCAACTTAATTTGTATTTTGTTATACCTGTATAAAATGTTGGATTTTCGAACGAAGAATTTCTTAGATGTGAGTTCACCCTTTTGTGTGTGGATCATGCATGTCTTTTACCATTTCAAGTTGAGTCAATCAATCATTGATTTGGTTATACAAAGTTTTTGAAACATAAGTGCAACAAGAGTAAGATGGCTTTTTTAATGTATAAATTACATCTTTTAAGATTCTGGAGCATAGCTATAGACGCAGTTAAACTTGCTTAACATTACCCCAACAGTCTGGTAAAAATCTTTTATTTTATTGGTTGAAGCACCTAATGACAATTCTTATCCTATGTTTTGCTCAGAGAAATGCAAAGACAGCAGTCACAGCCATGCTAACAAGTTCTCATGAAGTTATTGCACCCGAAGATGTTTGTTTGACAGAAGAGGAGAGAACTGCTAAAGAACAGGCTAAACTTGTTCCAACGATGACTGGGGGACAGTTAAAGACATATCAAATCAAAGGCGTGAAGTGGATGATTTCATTATGGCAAAATGGACTTAACGGGATACTAGCAGATCAGATGGGTCTTGGTAAAACGATTCAGACTATTGGATTTATTGCACATCTCAAAAGTAATTGCATTGATGGACCATATATGATTGTTGCTCCGTTATCTACTTTATCAAACTGGGCTAGTGAATTCAATAGGTAAGATCATTGATGTGTGCGCTTTTGCATTGTTCACACACATATGTAGGGAAAATTTATTGGAATGACACAATGAATCTCAATCATTTGATTGCCCTTTGATTTCAACCCCATGTGTGAACATAATGAGATCAACGGTCCATATTTATTGTGTCACCAATTGTGTTTAATTTTATGTGTAAATAGCCAGTCCCATATGTATGTATGTATGCATGCACGTACATACTCAAAAGGATGTTATTTTCCCAGTTAGACGTTGTACCCGACTAAGAACAGTGAATTCTTGCTAATGGCTGCATGAGGAAAATATGGTGTAATGCTGGCTTTCAAAATAGTCATAAGACACTTAACATCTCTCTACCAAGAGATAGATAAACGCTAAAAAAGGTATTATAGGGGTACATTTGAATGGAAAAAATATTAGCTTGTGATGTGTGGAAACCGTAGCACAAGCTAAGATGATTGCATATTCATGTCCATATCATAACCCCATTTCACTGGAATAATAGCTAAGATGACAATAATAGCTTGGCAGGTGTGTACATGTTTATAGAAAAATATACAAATTTTGTAGAAAAATTACACACGAGCACAAAAACTCTTGAATGATTAACGATCCCAAATACAAATTGTGTCTTGCTTCTTTATACTTTTCATTCATACATGACACTTTAAATAGGCTGCTCATAGAGTGGAATATACATTTTTAATTGATTCTCAAATCATTAAAAGTATTATTGTTCAGAAATTAAACTTAACTTAGTTAAAAGAAATGGAAACTAGAAATAGACATAGATGTTGGTGAAAATGGCTTTGAACTATTAACATAGAACAATGACACGTTTGTTGCTACACCATTAAACCAAGCTCATGGAGTGGCACCAAGTGACGAAATACAGGAGCATTACGTATTAGAGATGATAATGATAATGATCTATACCAGTTTCCCCTTTGTTTTCCGTCATTTCTATTATATTACTTTTTTTTGCATGATGCAACCTTATTAGCTTATCATGCTTCTGAGTCCAGTAATAATTATTATTAATCTTTTTTATTGAATGAATTTTATTGTTGTCTTCTGGAACAACATTATGATATTTATAATTTGGGTTGCTTTAGTTTTTTTTAAATCTTTTTAGCGATAAGCTTAAAAATGTATTGAAGTTTTGCTGTAATCTTGCTTTGAGAGTGTCTAACCTTTTTATTTTACACTAGGTTTGTACCAACTATTGAAGTAATCATATACCATGGAAGCAAAGGGGAGAGAAGGGAAATGCAAAAGAAGTTAATGCCTAAAACCATTGGTCCTAATTTTCCCATCATAATCACTTCCTATGAGGTGGTACTAAATGATGCACGATCATTAGCTCACTATAGATGGAAGTATGTTGTCGTGGATGAGGTGAGTTAAACCTTAATGTTGTATGTTGATGTTCTTTTCTGAGTATTCCGACACCTCTTGTGGTCTCTTCAATGTTTTGTAGGGACATCGATTAAAAAATAAGAATTGCATCTTGTTGAGGGAAATGAGACGCTTGCCAATTGAAAATAAGCTTCTTCTGACCGGGACACCTCTGCAAAACAACTTATCAGAGCTTTGGTCAATGTTGCATTTCATTTTGCCAGACATTTTTTCCTCCCATACCGAGTTCGAATCCTGGTAAGGCTTTGATCAGTGGAAAAATAACTGCCGCAACTAACATTTAATATTTCATCAACATAGTTTGATATTGCTAAGATACAAGGTTTTTATCTAAAGTACTATATATATGTATTAATGTATATGTTTTTTTTTTGGTATATGAAAAGATAATTTCTAGTTCAATGTTAGTACGCTTTAATCAGTTATTGTTCTTTGTGCTCCACTCCATAAGATGTTTAGATAGGACTTAATTTAGTTTTATTGCTTTTTCTCTGTGGTCAGGTTAATACAACAATATATGTACAGGAGGACAAAGACAAACATTTTAAAAAAGTTTGTCCTTACAATGTTGATAAGCAGTTTTAAATTTCTTATTCTGTTCAGGTTTGATCTGTCAGGGAGATGCAATAGTGACTCTCAACGCGAAGATTCCGAAGAAAGTAGAAATGTTCAGGTATTTTTCAGTTCAAATGTAAGTATTTAATTTTGCTACTTTCCTTTTTTTATGATATGTTTTTTACAGGTGGTATCAAAGTTACATTCAGTTCTTCGTCCATTTCTTTTACGACGTATAAAGCTAGATGTTGAGCAGAACCTTCCAAGAAAGAAAGAAATTATAATATACGTCAATATGACTGATTATCAAAAGAACATCCAAAATCGTTTACTCAACAGGACACTTGAAAGTTATTTTATCAAAGAGTATTCAACTTGTATGCCACTTGTACTTTTACTCATAGGCCCATATGATGTTTTGGTTTAGTTAACCCTAACTGAGTTTATGCTGTTTCTGTAGATGGTATACCTCCTACAAGGCAAATGAAAGGAAAGCTGAACAGTTTGTTCATTCAACTTAGAAAAAACTGCAACCATCCTGATCTCATAGAATATCAGTATGATGGATCATGTAAGAATTACTCTAATGATATCCTACATGTTATTTCCTATATTCATAGAATTTGCTTCTAAAGCTTTTATTTCATTTATCTCTTCAGATTTTTATCCACCAGTCAATCAATTAGTTGAACAGTGTGGCAAGCTCCAATTGCTGGACAGATTGGTGAATTCGCTACTTGCTAGGAAACACAAAGTATCTATGCATGTTTTACTTACTCCCACTTTATATTCAGTTGGTATATCTTAATTTTGATTTTTTGGGTTTATATTCAGATTTTAGTGTTTTCGCAATGGACCAAAGTTCTAGACATACTTGATCACTTCTTTGCCGAGAAGGGTCTTGAAGCTTGCAGACTTGATGGCGGTGTTAAGTTGGCTGAAAGGAAAAGACAGGTAAAACTTTGCTAATGCTTTATTTTTCTTGATATAATTACGAGTTTATCTGCACACAATATAACTCTTATGATTTTGATTTTCTTTATTTTTTACATTTAAGATCGATGAGTTCAATGACTTGAACAGCAGTATCAGTGTATTTCTTCTTAGTACCCGAGCTGGTGGGTTGGGTATTAATCTTACTGCTGCCGATACATGCATTATCTACGATAGTGACTGGGTAATTTATCTGCTCTACTGAACTCAACAAATGCTTCCTGCCTTTGTTTTTTCAAACTTATTATGATTTTTGTATACAGAATCCTCAAATGGATTTGCAAGCAATGGATAGATGTCATAGGATAGGGCAAACTCGCCCAGTGCACGTATACAGGCTTGCAACTTCTCACACTGTTGAGGTATGTGGTATCTAGTGTTTCTTCTAAGCAAACATCATAAGAATATATTGTCAGAAACCCTTCTTTTTACTAGGGGCGAATCATCAAGAGAGCACTTGGAAAACTGAAATTAGAACATGTGGTAATCACCGAAGGGCAGTTTCAGCAAGACAAGTTGAAGAATTCCTTAGATGTAAGCTTAAATTTACCCTTAAAACTTTCAGACTGTCTTGTTCTTTGAATTCTAGTGTAATATTGCTTTTGAAATATTTAGGAAGCAGAACTTCTAGCAATGCTTAAAGATGAAGAAAATCCAGAAGAAAAACTGACACAAATGGATATAAGTGATGCTGATTTGGTTAGAGTGATGGATCGCAGTGACTTGATGCCTGATGTTGAAGCTAGTTGCGATCTACCTCTGCGAGGTCCGGGGTGGGAAGTTATAATTCCAACTCAGAGTAGCAGTGGTGTTCTCTCTTCAATCCACGACTAACTCTTTCTTGATGATGATGGTGGTTTAAACTATAGAGCTTGGTCTGTAGTTTATTTTTTGGGGGGTTTTTGGTTATAGCTAGCTAATCTTGTTTGAATTTGCTACATGTAGTATGGTAATCTGTGATGATAGTGCTTGGCTTTGTATTGCAATTCGTATTGAAGGTTTTATCGTGTACGTTGTTAT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010936285.1	1.3e-288	ATP-dependent DNA helicase DDM1 isoform X2
Swissprot	Q9XFH4.1	7.7e-243	SWI/SNF2-related matrix-associated actin-dependent regulator of chromatin DDM1
trEMBL	A0A6I9S1M1	9.1e-289	ATP-dependent DNA helicase DDM1 isoform X2

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G66750.1	58.95	0.0	886	ATDDM1;CHA1;CHR01;CHR1;DDM1;SOM1;SOM4	chromatin remodeling 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G05935	AT5G66750.1	765	270	13	8	758	29	763	58.95	0.0	886
AfisC2G05935	AT5G18620.1	552	274	10	189	734	187	698	42.03	2e-122	436
AfisC2G05935	AT5G18620.2	552	274	10	189	734	187	698	42.03	2e-122	436

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00176.20	SNF2_N	Family	205	502	221.7	1e-65
PF00271.28	Helicase_C	Family	527	637	68.3	5.8e-19

Gene Ontology

Accession	Ontology	Name
GO:0000183	P	chromatin silencing at rDNA
GO:0000793	C	condensed chromosome
GO:0036310	F	annealing helicase activity
GO:0000786	C	nucleosome
GO:0000790	C	nuclear chromatin
GO:0000978	F	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980	F	RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001105	F	RNA polymerase II transcription coactivator activity
GO:0001164	F	RNA polymerase I CORE element sequence-specific DNA binding
GO:0001410	P	chlamydospore formation
GO:0002039	F	p53 binding
GO:0003407	P	neural retina development
GO:0003697	F	single-stranded DNA binding
GO:0003714	F	transcription corepressor activity
GO:0006369	P	termination of RNA polymerase II transcription
GO:0016020	C	membrane
GO:0004003	F	ATP-dependent DNA helicase activity
GO:0005829	C	cytosol
GO:0005524	F	ATP binding
GO:0005615	C	extracellular space
GO:0005667	C	transcription factor complex
GO:0005677	C	chromatin silencing complex
GO:0005700	C	polytene chromosome
GO:0005730	C	nucleolus
GO:0006302	P	double-strand break repair
GO:0006337	P	nucleosome disassembly
GO:0006344	P	maintenance of chromatin silencing
GO:0006346	P	methylation-dependent chromatin silencing
GO:0006348	P	chromatin silencing at telomere
GO:0006349	P	regulation of gene expression by genetic imprinting
GO:0006352	P	DNA-templated transcription, initiation
GO:0019237	F	centromeric DNA binding
GO:0009790	P	embryo development
GO:0007420	P	brain development
GO:0007517	P	muscle organ development
GO:0008285	P	negative regulation of cell proliferation
GO:0008623	C	CHRAC
GO:0009294	P	DNA mediated transformation
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0015616	F	DNA translocase activity
GO:0016514	C	SWI/SNF complex
GO:0016584	P	nucleosome positioning
GO:0016589	C	NURF complex
GO:0016590	C	ACF complex
GO:0019233	P	sensory perception of pain
GO:0030177	P	positive regulation of Wnt signaling pathway
GO:0030308	P	negative regulation of cell growth
GO:0030447	P	filamentous growth
GO:0030957	F	Tat protein binding
GO:0031213	C	RSF complex
GO:0031492	F	nucleosomal DNA binding
GO:0032197	P	transposition, RNA-mediated
GO:0034080	P	CENP-A containing nucleosome assembly
GO:0035041	P	sperm chromatin decondensation
GO:0035060	C	brahma complex
GO:0035063	P	nuclear speck organization
GO:0035076	P	ecdysone receptor-mediated signaling pathway
GO:0035092	P	sperm chromatin condensation
GO:0035690	P	cellular response to drug
GO:0035887	P	aortic smooth muscle cell differentiation
GO:0042752	P	regulation of circadian rhythm
GO:0042766	P	nucleosome mobilization
GO:0043596	C	nuclear replication fork
GO:0043923	P	positive regulation by host of viral transcription
GO:0044030	P	regulation of DNA methylation
GO:0045111	C	intermediate filament cytoskeleton
GO:0045815	P	positive regulation of gene expression, epigenetic
GO:0046020	P	negative regulation of transcription from RNA polymerase II promoter by pheromones
GO:0047485	F	protein N-terminus binding
GO:0048813	P	dendrite morphogenesis
GO:0050681	F	androgen receptor binding
GO:0051091	P	positive regulation of sequence-specific DNA binding transcription factor activity
GO:0051574	P	positive regulation of histone H3-K9 methylation
GO:0060195	P	negative regulation of antisense RNA transcription
GO:0060766	P	negative regulation of androgen receptor signaling pathway
GO:0070182	F	DNA polymerase binding
GO:0070577	F	lysine-acetylated histone binding
GO:0070615	F	nucleosome-dependent ATPase activity
GO:0071280	P	cellular response to copper ion
GO:0071564	C	npBAF complex
GO:0071565	C	nBAF complex
GO:0090241	P	negative regulation of histone H4 acetylation
GO:0090537	C	CERF complex
GO:0098687	C	chromosomal region
GO:1900036	P	positive regulation of cellular response to heat
GO:1901838	P	positive regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter
GO:1902661	P	positive regulation of glucose mediated signaling pathway
GO:1902895	P	positive regulation of pri-miRNA transcription from RNA polymerase II promoter
GO:1903047	P	mitotic cell cycle process
GO:2000177	P	regulation of neural precursor cell proliferation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K19001	HELLS, DDM1; ATP-dependent DNA helicase	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network