result

Gene information

Detail information of AfisC2G06055

Location

Gene	Chr	Start	End	Strand
AfisC2G06055	chr2	991510892	991513093	-

Sequences

CDS

>AfisC2G06055
ATGGATACATTATTCAGGTTAGTCAGCCTCCAATCTTCAGACCATCAACAGCAGTCCAACTCCAGCTTCAACTCCAGCCGTACTTCAACGACCAGCTCCAAATCATTGAAACAAAATCATTACCATCGTCGCCATAGCAATAACTACAACCATCACTTTCAAACTTACTCCTCCCAAGAAGAAGTAGACCAAGAAGAAGAATGCTTCAACACCACCAACCAAGTTTACATGGATGAAGACTTCTCCTCCTCCTCCTCAAACCCTAACTCAAGTACCCCCACCTTCTCCATCCCTCAAAACCCAAATCTCCCCGAACTCCTCCTCGAATGCTCCCGCGCCTTCTCCACCCACGACACCCCTCGTATCCAACACCTCATGTGGATGATCAACGAGCTCTCCTCCCCTTACGGCGACCCTGATCAGAAGCTCGCTTCCTACATCCTCCAAGCCTTCTTCGCCAAACTCTCCAACTCCGGCCCTCGCACCCTCCAAACCCTCTCCTCTGCCTCCGAGAAAACCATGTCCTTCGACTCAACCCGTCGAATCGCCCTAAAGTTCCAAGAGCTCAGCCCCTGGTCCTCCTTCGGCCACGTGGCCTCCAACGGCGCCATCCTCGAAGCCTTCCTCGAACCCGATTCTTTAAACCGTCCGCTCCACATAATAGACGTGAGCAACACGTTCTGCACGCAGTGGCCGACGCTGCTGGAGGCGCTGGCGACGAGGTCCACTGAGGACACGCCTCACCTGACGGTGACCACGGTGGTGACGTCGTGCACGCAGAGGGTGATGAAGGAGATCGCGTCCAGGATGGAGAAGTTCGCCAGGCTCATGGGGGTCCCCTTCCGGTTCAACGTGGTGCGCCATTCTGGGGACCTGTCCACGCTCGACCTGGACCGGCTTCACGTCGACCCTGCCGCGACCACAGCGATCAACCTGGTCAACGCGCTCCGTACAGTCTCGCCGGCTGGGGGCAGACGCGATGTTTTTCTGTCAGCGCTCCACGGACTTCAGCCCAAGATCGTGACAGTGGTGGAGGAGCATGCGGATTTATCGGACTTGGGGGAGGAGATGAGATGGTTTGGTGATGCGGTGAGGTTTTATGCTGCGTATTTTGATTCATTGGAGGAGAGCTTTGGGAAAACAAGCAACGAGAGGCTGGCACTGGAGAGGCAGGCTGGGAGGGGGATGGTGGACTTAGTGGCATGCCCTACGGAAGGGTCCAAGGAGAGGAGGGAGACGGGGAGGGGGTGGGCCAGGAGGATGGGGATGGCAGGGTTTAGGGCAGCAGGGTTCAGTGATGACGTGGCCGATGACGTGAGGGCGTTGCTGAGAAGGTATAGGGAAGGGTGGGGGATGAGAGGGGCGGAGGCCGGGAACGAAGGAGGGGTGTTTTTGGAATGGAAGGAGCAGCCCGTTGTCTGGGCCAGCGCTTGGAGGTTGTAA

Protein

Gene

>AfisC2G06055
CTCGGTATTAAAGCAGATTTGCACAGGAAAAAGAAAGCATGTGTACTGAATACTACTAGATGCTCCACCCTTGCCCAAGTTAAAAATTAAACTCATTCTCAAATATAGTACTAACAACTCCTCTACAAATCTCACAACCCTAACACTTCACATCTTCCTCGTCTCATATGGAAACGCATTAAATGGATACATTATTCAGGTTAGTCAGCCTCCAATCTTCAGACCATCAACAGCAGTCCAACTCCAGCTTCAACTCCAGCCGTACTTCAACGACCAGCTCCAAATCATTGAAACAAAATCATTACCATCGTCGCCATAGCAATAACTACAACCATCACTTTCAAACTTACTCCTCCCAAGAAGAAGTAGACCAAGAAGAAGAATGCTTCAACACCACCAACCAAGTTTACATGGATGAAGACTTCTCCTCCTCCTCCTCAAACCCTAACTCAAGTACCCCCACCTTCTCCATCCCTCAAAACCCAAATCTCCCCGAACTCCTCCTCGAATGCTCCCGCGCCTTCTCCACCCACGACACCCCTCGTATCCAACACCTCATGTGGATGATCAACGAGCTCTCCTCCCCTTACGGCGACCCTGATCAGAAGCTCGCTTCCTACATCCTCCAAGCCTTCTTCGCCAAACTCTCCAACTCCGGCCCTCGCACCCTCCAAACCCTCTCCTCTGCCTCCGAGAAAACCATGTCCTTCGACTCAACCCGTCGAATCGCCCTAAAGTTCCAAGAGCTCAGCCCCTGGTCCTCCTTCGGCCACGTGGCCTCCAACGGCGCCATCCTCGAAGCCTTCCTCGAACCCGATTCTTTAAACCGTCCGCTCCACATAATAGACGTGAGCAACACGTTCTGCACGCAGTGGCCGACGCTGCTGGAGGCGCTGGCGACGAGGTCCACTGAGGACACGCCTCACCTGACGGTGACCACGGTGGTGACGTCGTGCACGCAGAGGGTGATGAAGGAGATCGCGTCCAGGATGGAGAAGTTCGCCAGGCTCATGGGGGTCCCCTTCCGGTTCAACGTGGTGCGCCATTCTGGGGACCTGTCCACGCTCGACCTGGACCGGCTTCACGTCGACCCTGCCGCGACCACAGCGATCAACCTGGTCAACGCGCTCCGTACAGTCTCGCCGGCTGGGGGCAGACGCGATGTTTTTCTGTCAGCGCTCCACGGACTTCAGCCCAAGATCGTGACAGTGGTGGAGGAGCATGCGGATTTATCGGACTTGGGGGAGGAGATGAGATGGTTTGGTGATGCGGTGAGGTTTTATGCTGCGTATTTTGATTCATTGGAGGAGAGCTTTGGGAAAACAAGCAACGAGAGGCTGGCACTGGAGAGGCAGGCTGGGAGGGGGATGGTGGACTTAGTGGCATGCCCTACGGAAGGGTCCAAGGAGAGGAGGGAGACGGGGAGGGGGTGGGCCAGGAGGATGGGGATGGCAGGGTTTAGGGCAGCAGGGTTCAGTGATGACGTGGCCGATGACGTGAGGGCGTTGCTGAGAAGGTATAGGGAAGGGTGGGGGATGAGAGGGGCGGAGGCCGGGAACGAAGGAGGGGTGTTTTTGGAATGGAAGGAGCAGCCCGTTGTCTGGGCCAGCGCTTGGAGGTTGTAAGTTTGAATATTTGGCACGTGCCGGAATGTAAGTGCCGAATATTTTTAGATTGATTTTCTTACAAAATATTTTGATGACGGCTGTTATTCTCTGCTTCATTGCCTGTTTATTTATTTTTTAGGTTTTTCCTACTCTTCTTTATTTTTTTCTGCATTTAATTTTGCTTTAGCGTGTTATATATATGAGGCTCATGGATATAAGATTCTTTGCGTATATTCATTTATTTTATATTATGCTTATGCAATATTAGTTAGAAAAATAAGATTTGCCATTTTGATTGTAGGTGCACTTGTCACTGCATGTACCCTATTGGCTACTGCAATATACAATCTTTTGATGTGGTCACAACGAAGACAGCTTTTTTTTTTTTTCCGTCTCCCCTTTTTCTTTTTTGACTATTTAGGTCTACATAGTATACTAATGCCATCATATTATTTAAGCTTAGTATTAGACTGGGAGAGACTTTGTCACAATACATGGATGAACATTGCCGGCCTACATATCTTACTACTTGTGTTGTGTCATATAATGCATATGTTTGATTATCAAAATGATGAGATATATGTAAGATAGCCAC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010938978.1	1.6e-135	protein SHORT-ROOT 1-like
Swissprot	Q8H2X8.2	4.6e-132	GRAS family protein 38
trEMBL	A0A8K0I910	6.0e-137	Protein SHORT-ROOT 1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G37650.1	47.03	2e-122	436	SGR7;SHR	GRAS family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G06055	AT4G37650.1	538	217	12	1	479	1	529	47.03	2e-122	436
AfisC2G06055	AT3G49950.1	394	237	13	105	478	29	407	30.96	2e-38	157
AfisC2G06055	AT2G04890.1	384	251	10	102	479	49	413	28.12	4e-38	156

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	105	479	305.5	4.4e-91

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0005768	C	endosome
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008356	P	asymmetric cell division
GO:0009956	P	radial pattern formation
GO:0032350	P	regulation of hormone metabolic process
GO:0043565	F	sequence-specific DNA binding
GO:0045930	P	negative regulation of mitotic cell cycle
GO:0048366	P	leaf development
GO:0055072	P	iron ion homeostasis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network