result

Gene information

Detail information of AfisC2G06199

Location

Gene	Chr	Start	End	Strand
AfisC2G06199	chr2	1013149104	1013151160	+

Sequences

CDS

Protein

Gene

>AfisC2G06199
ATGAATATGAGAAATTTTGACATGAACAAGCCAGCTTGTGGGTCGGAGGAAGAGTTTTCATTTTGTAGCGCTGAAGATGGCGAAGATGTAGAAGACGAAGGAAGCAAATGTAAGTCCAAGAAGCTTCAGCTCTCGAAAGAGCAGTGCAGATTACTGGAAGAAAGTTTCAGGCACAACCAAACTCTCAATCATGTGAGACAAATTTTGTTTCTACTTTTGAATAATTTTCCATGGTTCATAATGGATTTAATACTTTTGTTGCCAAAGGCATAACTTGAGTTCTATTTTTGACCAAGGAGACGAAGCAAACAGTGGTAGAATATTGTTTTACTGTGGTTTTTAAAGGCTCTACATATACTTTCATAAAATGTTCTGGTTTTCTTCTGCTAACTAGAATTATATTAATTAGACTCTATTCCTTTTAGAAGAAGAAAACGAAGTTGTTTAACATAATTCTACCACGTTCAAATGTGCATCATCTAGGAACAAGTGGGGAAGTATGGCAATTTCTTAGCTAGAAGTAGCTGTATAGGTAAATTTAATTATAGACCAGGTAACCATAATACTATTGCACAAAGTAGTTAACCCGGTCCTAAGAGAGCCCTAGTCATTAGCATTTTAAAAACTTTAATTATGCACAAAAATCAAATTCTTTGCCAAAGTTATTATCATTGTACTTACAAATGAGGTCACAAGTTTAACTCCAAGTCATGACATTTTTCTTCATATTTTTCCAATATATTTATGCTTGTTATATTTTCAATATCAATACATAATTTTTTGAATATTTATTCTTCGTGGTATTGTTTTACATTCATACGTACGTACACAATATTCTACTAGGTTTTTTTTATCCACATCCATGTTTGTGAATATTTTTTATTTAAATTATATAAATATAGAATTTGATGATTTAAATCAAAATATTTTTTTATAGAAATTTGTATGTACATGTGCATCATCCATGTACTAGTTTAGGATAGTGGAAATTTCGCTATGCAAGTATTGCTCTATTTTTTATTAATAAAATACAAATTTCTATCTTTAATATGAGAAAAATTATAATATATTAGAACTCTAACCGTTTCCGTTTCTTTATGGAATACAGAGGTTTTGCATCCTGAAATATGAACTACCTACGTTTTGAATATGGCATATGAAACATATTGATTGAGCATAAAAATTCCAATGTAATGGTGAAATGAAAGCTTATTGAATGAATCCCATTGAACCTTTTTCAGGTCTTCTGGAAATAGTTATTCCTTGAATCAAATTCCAAAAAATAAAAAAAATAGTAATAATAAATAAATAAATAAAATGACATCCAATTGACAAGAACTGACATGGAATGGTATTTTTGAGATAGTTGGTATAATGCTAATGAAATTGTAGCTGCCGAAGGAAAATTTAGTGTGAATAGTAATACTCAGTTAGAAGTAGAGATTAAATGATACAACTCCCACTGAGAATAATTCAAGATCATGTATCTTTGTATAATCAGGCAAAAAATATTTGGTTGCAAATTTATATTTAGGCCTAGGTACCTGATATATATTATTGGATACATTGATTATCCAATATTTATAACAATTAACAACTAATCATGACCATTAATCATCCAACTCTCAGAAACAAAAGGAGGAACTGGCATCAAAGCTGAAGCTGAGACCAAGGCAGGTTGAGGTCTGGTTCCAGAACCACAGGGCAAGGTGTGTACTTTCAATTTATGCTCAAAAGTGCTATTTGAATACTTGAAATTCCAATTGTCAATACCTGATTGTTTGGACATCAAACTGAAATGTGCTTTCAGGACTAAACTGAAGCAGACCGAAATGGAATGTCGATACCTGAAACGGTGCTTTACATTTCTACGGGAAGAGAATCAAAGGCTTCAGGTAGAAGTGGAGAAACTTCGTGCAATTCGTGCATCTCCTCCAACTGTCATATTACCAGACACTAACAAACCTATTTTTGCATCTGAGCTTTCTCTGTGCCCAAGGTGTCAATGCTTCACCGCTTTCGCTAGCAATGGAAGAAAGGATGAGAGAACTAATTAG

Functional annotation

Database	accession number	e-value	annotation
nr	MQL84925.1	2.4e-46	hypothetical protein
Swissprot	Q0JKX1.1	2.1e-42	Homeodomain transcription factor HOX3
trEMBL	A0A835PRT9	1.6e-47	Homeobox domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G01430.1	59.86	3e-39	157	ATHB-17;ATHB17;HB17	homeobox-leucine zipper protein 17

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G06199	AT2G01430.1	147	48	3	23	166	119	257	59.86	3e-39	157
AfisC2G06199	AT1G70920.1	165	68	4	2	164	30	180	49.09	7e-34	139
AfisC2G06199	AT5G06710.1	130	49	3	28	156	179	300	55.38	3e-31	131

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	39	93	60.3	1e-16
PF02183.15	HALZ	Family	95	127	33.5	3.2e-08

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009506	C	plasmodesma
GO:0009641	P	shade avoidance
GO:0009735	P	response to cytokinin
GO:0010218	P	response to far red light
GO:0044212	F	transcription regulatory region DNA binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network