result

Gene information

Detail information of AfisC2G06416

Location

Gene	Chr	Start	End	Strand
AfisC2G06416	chr2	1036891949	1036894123	-

Sequences

CDS

>AfisC2G06416
ATGCTCATCTTCTTCTTCTTCTTTCTCTGCTTAAACCCGTTCTCAGTATTATGTACATCAACAAATGACACATATACCCTCACCAAATTCAGGCAAAGTGCAGATATACATGGAAATTTGGCCCTAAATTGGAGCACATCTAATGCTTGTGCCTGGACTGGCGTATTATGCTCTCCTATTACAGGTAGAGTCATTTCCCTTTCTCTTCCTGGGTTCGACCTTCATGGTCCCCTCGACATTCTTTCAGGCCTTGACCAGCTCCATTTCCTCCGTCTCCATGGCAATAGCCTTAACGGAACTCTCTTCTCCATCATCTCCTCATTATCTCATCTGAAAGTAATCAGTCTATACAGAAATGGCATTTCAGGTTCTATACCACAACAACTGGGCTTACTTAATCATTTAGTGCATGTAGATATGTCCTACAACAAACTTGAAGGTCCCATTGTTTCTAGTACATTCTGGAACCTCAGTCAACTCCTCACATTTCGCGCTCAGTACAATCGTCTCTCTGGACATATACCTGATCTTACAGTTGTTTTGCCTAAACTGTCGAAATTTAATGTTTCATATAACATGTTGTATGGCAATGTGCCCAATGCCATGATTATGAAGTTTGGTAAAACTTCTTTTTTGGGGAGCGAAAATTCTTTACCAGAACCTCAGCCTGTGGTCGCTTGTATTTCAGGATTAAATTGTTCAAGTTCTTGCAATACAGATGAAAAGTGGCCATTAAAACATGTGATAATTTTGATTCTTACCGAGAATGTCGCATTTATATTTGTGTTTATGTTGTTGGTGGCCTCTTTCTGCTTCTATTTTAATTGTAAAATATGGAAGAAAAGCAAAGCAGTAGATGCATGCCAAAAAGAAGTTAGGAAAGAAGGAAGTAAGCAAATGGGAAATAAAGACGATTCAGGGGAAGAGAGTGACAATTCCGAAGAGGAAGAAGATGTGGTGGTGCAAAGCAAGTTGGTATTTTTTCAAGAACCAAATTACAATAGTAGTAACATCACTGCAAGAGATGTGTTTGGGATAGAAGAGCTTCTTTGTGCTTCTGCGGAGATGATAGGAAAGGGTAGCGTTGGAATAGTGTATAAAGCGGTGCTCGAGAATGGCTCGACAATTGCAGTGAAGAGGCTCAAGGGTTCTAATACTTTTAACCACGACGAGTTTCGTAGTTGCATGGATGTTATCGGTAATGTTGCACATTCTAATGTCCTAACTTTGAAGGCTTATTACTACTATGCTCCTCAAGGAAGGCTTCTTATCTACGACTACCTTCCCAAAGGCTCATTACACTCCCTTCTTCATGAAAATCGAGGAGGCAGAAGGCGCACGAAACTTGATTGGACTAGGAGGATAAAAGCAGTACTTGAAAGCGCTCGAGGACTTGCTTACATTCACCAATATTATGGTTGGCATGGAAACATCAAGTCCCCGAACATACTAGTCGGTTATAATGGGACTGCTTGCATCTCCGACTTTGGCCATGCACAACTTATCGATCCAGAAAGAGTCATATCAAAACTGGGAGGATACATTGCTCCAGAACAGAAAGAAAGCATCAAATGCAACATGAAAGAAGAAGTCTTTTCAGAAGAGGCAGATGTTTATGCATTTGGAGTGGTTATACTTGAAGTGATAACTGGAAACAAACCTACACTGTATCCTTCAAAATATAAAAGAAATATGAACAGATACAGAAGTCCCATAAGCCTTCCTGAGTGGGTGGAGTTTGTGGTTAATGAAGAATGGAGCTCTGAAGTTTTTGATCCAGAACTGATGAGAAATAGCAACGATGAGAATGAGATGCTGTGTATGTTACATATCGCTATGAAGTGTGTTGATTATAGTGCTGAGAATAGGCCTAGAATTATTGATGTTGTTAAGTTTATGGAGGATAATATTGGTATAGAGGAGCATTAG

Protein

Gene

>AfisC2G06416
ATGCTCATCTTCTTCTTCTTCTTTCTCTGCTTAAACCCGTTCTCAGTATTATGTACATCAACAAATGACACATATACCCTCACCAAATTCAGGCAAAGTGCAGATATACATGGAAATTTGGCCCTAAATTGGAGCACATCTAATGCTTGTGCCTGGACTGGCGTATTATGCTCTCCTATTACAGGTAGAGTCATTTCCCTTTCTCTTCCTGGGTTCGACCTTCATGGTCCCCTCGACATTCTTTCAGGCCTTGACCAGCTCCATTTCCTCCGTCTCCATGGCAATAGCCTTAACGGAACTCTCTTCTCCATCATCTCCTCATTATCTCATCTGAAAGTAATCAGTCTATACAGAAATGGCATTTCAGGTTCTATACCACAACAACTGGGCTTACTTAATCATTTAGTGCATGTAGATATGTCCTACAACAAACTTGAAGGTCCCATTGTTTCTAGTACATTCTGGAACCTCAGTCAACTCCTCACATTTCGCGCTCAGTACAATCGTCTCTCTGGACATATACCTGATCTTACAGTTGTTTTGCCTAAACTGTCGAAATTTAATGTTTCATATAACATGTTGTATGGCAATGTGCCCAATGCCATGATTATGAAGTTTGGTAAAACTTCTTTTTTGGGGAGCGAAAATTCTTTACCAGAACCTCAGCCTGTGGTCGCTTGTATTTCAGGATTAAATTGTTCAAGTTCTTGCAATACAGATGAAAAGTGGCCATTAAAACATGTGATAATTTTGATTCTTACCGAGAATGTCGCATTTATATTTGTGTTTATGTTGTTGGTGGCCTCTTTCTGCTTCTATTTTAATTGTAAAATATGGAAGAAAAGCAAAGCAGTAGATGCATGCCAAAAAGAAGTTAGGAAAGAAGGAAGTAAGCAAATGGGAAATAAAGACGATTCAGGGGAAGAGAGTGACAATTCCGAAGAGGAAGAAGATGTGGTGGTGCAAAGCAAGTTGGTATTTTTTCAAGAACCAAATTACAATAGTAGTAACATCACTGCAAGAGATGTGTTTGGGATAGAAGAGCTTCTTTGTGCTTCTGCGGAGATGATAGGAAAGGGTAGCGTTGGAATAGTGTATAAAGCGGTGCTCGAGAATGGCTCGACAATTGCAGTGAAGAGGCTCAAGGGTTCTAATACTTTTAACCACGACGAGTTTCGTAGTTGCATGGATGTTATCGGTAATGTTGCACATTCTAATGTCCTAACTTTGAAGGCTTATTACTACTATGCTCCTCAAGGAAGGCTTCTTATCTACGACTACCTTCCCAAAGGCTCATTACACTCCCTTCTTCATGGTATCGTTTATTTTCCGATAAATTCATAAGATTGAATCACTAATTATGCATGCCCTTAGGCTCAACATTTATCCTTTAGTGTCGTTGTAAAATTTATGAATATGAATACTTTTATATTAGCCTCATTTCATGTTAAATGAATAGAAAATCGAGGAGGCAGAAGGCGCACGAAACTTGATTGGACTAGGAGGATAAAAGCAGTACTTGAAAGCGCTCGAGGACTTGCTTACATTCACCAATATTATGGTTGGCATGGAAACATCAAGTCCCCGAACATACTAGTCGGTTATAATGGGACTGCTTGCATCTCCGACTTTGGCCATGCACAACTTATCGATCCAGAAAGAGTCATATCAAAACTGGGAGGATACATTGCTCCAGAACAGAAAGAAAGCATCAAATGCAACATGAAAGAAGAAGTCTTTTCAGAAGAGGCAGATGTTTATGCATTTGGAGTGGTTATACTTGAAGTGATAACTGGAAACAAACCTACACTGTATCCTTCAAAATATAAAAGAAATATGAACAGATACAGAAGTCCCATAAGCCTTCCTGAGTGGGTGGAGTTTGTGGTTAATGAAGAATGGAGCTCTGAAGTTTTTGATCCAGAACTGATGAGAAATAGCAACGATGAGAATGAGATGCTGTGTATGTTACATATCGCTATGAAGTGTGTTGATTATAGTGCTGAGAATAGGCCTAGAATTATTGATGTTGTTAAGTTTATGGAGGATAATATTGGTATAGAGGAGCATTAGTGTTAAGTTGATGGAGAAATATGCTACTTTCTACTGTTGTTTTTCTGTGAGCATGCATGCTTTGTATTTGTTATGTTTTGTTTTCAATATCTACAAGGAAAT

Functional annotation

Database	accession number	e-value	annotation
nr	TXG58365.1	6.8e-94	hypothetical protein EZV62_016194
Swissprot	Q9SJQ1.1	8.7e-86	Protein PXY/TDR-CORRELATED 1
trEMBL	A0A5C7HNP3	4.9e-94	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G36570.1	41.50	9e-126	447	PXC1	Leucine-rich repeat protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G06416	AT2G36570.1	653	316	19	20	635	21	644	41.50	9e-126	447
AfisC2G06416	AT3G08680.2	662	343	24	2	635	4	613	36.10	1e-91	334
AfisC2G06416	AT3G08680.1	662	343	24	2	635	4	613	36.10	1e-91	334

Ortholog group

Species	Genes
Allium cepa	g427042.t1
Allium fistulosum	AfisC2G06416
Allium sativum	Asa6G03847.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08263.9	LRRNT_2	Family	22	58	22.7	8.1e-05
PF07714.14	Pkinase_Tyr	Domain	355	632	105.7	2.1e-30

Gene Ontology

Accession	Ontology	Name
GO:0022625	C	cytosolic large ribosomal subunit
GO:0005515	F	protein binding
GO:0003729	F	mRNA binding
GO:0004674	F	protein serine/threonine kinase activity
GO:0046658	C	anchored component of plasma membrane
GO:0005774	C	vacuolar membrane
GO:0009505	C	plant-type cell wall
GO:0009506	C	plasmodesma
GO:0009610	P	response to symbiotic fungus
GO:0009737	P	response to abscisic acid
GO:0044237	P	cellular metabolic process
GO:0080092	P	regulation of pollen tube growth

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network