result

Gene information

Detail information of AfisC2G06486

Location

Gene	Chr	Start	End	Strand
AfisC2G06486	chr2	1043309011	1043309401	-

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	THU68192.1	1.5e-39	hypothetical protein C4D60_Mb08t01320
Swissprot	Q9SCU7.1	8.3e-40	Myb-related protein 30
trEMBL	A0A4S8K0L0	1.1e-39	Uncharacterized protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G74650.1	79.55	6e-40	158	ATMYB31;ATY13;MYB31	myb domain protein 31

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G06486	AT1G74650.1	88	18	1	88	1	88	79.55	6e-40	158
AfisC2G06486	AT5G62470.2	88	20	1	88	1	88	77.27	7e-40	158
AfisC2G06486	AT3G28910.1	88	19	1	88	1	88	78.41	7e-40	158

Ortholog group

Species	Genes
Allium cepa
Allium fistulosum	AfisC2G06486
Allium sativum	Asa0G01365.1
Arabidopsis thaliana
Oryza sativa	LOC_Os07g30130.1; LOC_Os07g30130.2; LOC_Os07g30130.3; LOC_Os07g30130.4

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	14	61	56.8	1.6e-15

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0016049	P	cell growth
GO:0001666	P	response to hypoxia
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009411	P	response to UV
GO:0009414	P	response to water deprivation
GO:0009611	P	response to wounding
GO:0009626	P	plant-type hypersensitive response
GO:0009651	P	response to salt stress
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009809	P	lignin biosynthetic process
GO:0009866	P	induced systemic resistance, ethylene mediated signaling pathway
GO:0009909	P	regulation of flower development
GO:0010091	P	trichome branching
GO:0010118	P	stomatal movement
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0042335	P	cuticle development
GO:0042761	P	very long-chain fatty acid biosynthetic process
GO:0043565	F	sequence-specific DNA binding
GO:0071281	P	cellular response to iron ion
GO:0071732	P	cellular response to nitric oxide
GO:0080091	P	regulation of raffinose metabolic process
GO:0080167	P	response to karrikin
GO:2000652	P	regulation of secondary cell wall biogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network