result

Gene information

Detail information of AfisC2G06599

Location

Gene	Chr	Start	End	Strand
AfisC2G06599	chr2	1061856324	1061859715	-

Sequences

CDS

Protein

Gene

>AfisC2G06599
AGTAATATCTTTTTCTTACCCATTTCCCAAAATCGAGTTCGATAAAACCCCAATTTCGCACGTTGAGATTGATTAAGAAATCCCATCAGCTGAGTGAATTTGAATTGTAAGTGATGGGGGAACCCGAAAGGTATAATAAATATTCGATCTTCCTCTCTCTCTTTTTTTTTCACTTTTAATTAGTTTTGTTCTGTGCGGAAAGATTAGGGTTTTTTGCTATGAGCTTCTTGAAATATTTGACCTAATTTTCTGATGTGCTTCATAGATTAGTCACGTCAAACATGCTTAATTCGTTGTGTTTCTGATTGGTTAGGAGAGTCTGGTTTGACAATAGCTCATGAATTTCTATTTGAAGATTGATCACCAATCCACTCTTGAGTATTCATTTGATCTAATAATTTCCCAATTTTTATAATCCCATGAAGGTAATTATTACTCTATGAAGCAAAAATAGAAGATACTCGATTTCAAAATTATCAAAAATAAAGAAAATTTTTTGATCACTGGAGTGCTTTTCTGCAAGTGTTCATGATAGTAGAGGTTAGAATGTTAGGAAGATAAATCAAAATATTAAAAGCTTGGTTAGTTGAAGTATTTTGTTGCTAATGCAGAGTTGGTAAATTGGACAGTAGCGAATTTCATTTGTAGTGTTGTTGCATTAACAACTAGGGAATTTACAGTTGAAGTTACTGTAGGCTAAGAATCATTATAGAATATATATGATACATACTTAACTTAAGAAAAAATAAGAAGGATATTTTGGTTGGCTGTTCTGATTTATTTTTCCTGCTGTCTTATTTGTACTAAGCTAGAAGGGGAAACGAAAGGCAGGTCTGAGGATGTAAAATTGCTTCAGTATGCTGCTAGGTATGACCAATTTTTCATGTTATGTACTTAGAAAAGATGTCTAATGACCTGCTATTATTTTAGAAGCCCCTTCTACGGTGTAAGTTTTGTGTCTCCCATCCATCAATTTGAATCGGTTAAAAACTGCCCGACTTCGACTAGTATTGTGGTTATGAATGCAGTATTAGCTGATAGTGGTGCATTAGCTTTCTGCAGTCTCCCTCATCATTATCACTGAATAATCTTATGTCTTAACTTTCAACCATGTGCCGTCAAATCATATTCTTCCATTTCTCTGTTGGTTTATCCATAGAAAATAAATTTAGCAGAAAATTTTCGTTTCAAGTCTTGAATTCCATACCATTTCTGAAACTTAATTCATTAACATGTAGAACACGAGCCCTTTCATTCCTTAAATGAAATTATAAGAATCAATCAACCGATCGCTCTACCACTGAAAATGATTTTCGAAATGAGAAGCAAACTGAACAAGGACTGTGGTTAAATGGGAGTTGTTGAAAATCAGGAATAAGATATAATGTACATGTTGATTCCTTCTGTTTTTCAATGATAAGAATGTCCTCTACATGTTCTCTACATGTTATTTCAGTAATATCTTTTCTTGGAAGTCTCAAAAGCTCTATATTTTTCAAAATTCAAAGATTTTAGAAACCCAATGATTTCGGACACAGTTGATTCTTATAGGCCTATTTTTTTTGAAAGTTCAAAATTTTACATATTAAAATCATTTTTATGAAATATATTTTGAAAATGAAAAACACAATACTCACTTTGTTTTGAACCCTATGCCAATTAAAGAAATGCATCGTCCTCTTCTTTGTGCCAGTCAAGGGATCTTAAATTTCAGTTAGTCGTCTCCAATTATAATATTTTAAGATTTATAGTTTCCAAAAATCAGATTTTAGACTTCCCGTTTATACTTCTACTTTGAAGTTCAAAGTTTTACAGAATATGATATACATTCGAAATTGAAATAGCATTGAATATCAAAACTTCGAAAAAATAGCTTTCAAGTTTTGCAAAAGAAAAGAAGATCCATCTTCCAACGAACAAATGGTGCTTATGATATTTAGTTGGATTTGAGCAATGGAGAAATATGTTTTATTATCCTTTTAACAATTTTGAAAATTAAATTTTCAGTTTCGTGGTCCGAACCTTATGGTTCGGTCTCGCGGTCTCTAGCCATCAACCTGCATGTTTGATGGATACATATTATGATTAATTTTAAAATCTATTTAGTTTTCAAGGTAATTTAATGATGTTTTTACTGAATTTGACAAAAAGAAAATGGACCGATCTTTAAACTCCCCACCGTGCAGAGTTATGTAATAAAACATCTTTTAGTTTGGACTGATCTTTAAACTCCTCACTGTGCAGAGTGAATAACATATGTAACAAAACATCTTTTAGTTTCTTGAAGTCGCTTCTTTTCCCTATGCAATTTTTTTTTATACAAATAATAGCACCACCCACTGTTTTTGCCATAACATAGCAGACTTAAGTTCATTTTTGTTTTTGTACTCATTTACCTCACCAAAAATGATGGTTAATATGCAACACCAAGAAGGTGTCCCTGTTACATGTTTGTTTATTTACGAGTTCGCATCTTATCGCAATTTTCACAATTGTAGAAGCATGCATGTATTCATGGTGGTTATGGCATTCATTATGCCAACATTACTGCTCATTTCCTTGTCACTAAACATCAAACCAATGTCAAATGCAGGAAAAGGAAACCGAGACGAAGAAGAGAGGGCCCCGACTCCCTAGCGGAAACACTAGCAAAATGGAAAGAGCTGAACAACCAACAATCTTCATCCACCAGCGGATCCCACCCCCCTCGAAAAACCCCCGCCAAAGGCTCCAGAAAAGGCTGCATGCGCGGGAAGGGCGGCCCCGAAAACTCCCGCTGCAACTACCGCGGCGTGCGCCAGCGCACCTGGGGCAAATGGGTTGCAGAGATCAGGGAACCGAACCGCGGCAGCAGGCTCTGGCTTGGCACCTTTGCCACGGCCGTGGAAGCCGCCAAAGCCTACGACGAAGCTGCAAAGGCCATGTACGGTCCATCCGCGCGCCTCAACTTTCCAGACGCCAGTTCGGTTTCGGAGTCATGTGGTTCTGCTAGCTATTCAAGTGTGTCCAACGTGGGAGATGATGGAACCATGGCCCCGAAGCTTGAAGCGGCTGATGATGAATGCCATCAGTGTAATCAGTCCGGCGCCGCCGCCGCCGATGATGACGATAAGGTCGTGTTCGAGAAGCTCGACCATATCGAGGATCTTCCGGAGGAGATGTTTGATATCGATGATGTGTTGAATATGATGGAAGATGGACTGAACGGTGAAGGTGATGAAGGTATGGTCGGAGACGGTTTCGACTGGCAGACATTGCAGTATGCAAGTCCTTCGGAGTACCGTTTTGACATGCAGTATCCGCATGGGATGATAAGGCCGATGAGGCAGGAGATGGACTATGCACCGCCGCCTGGGGATCCTGACATATTTGATACAAATTTCACTTACTGA

Functional annotation

Database	accession number	e-value	annotation
nr	ONK67881.1	2.9e-49	uncharacterized protein A4U43_C05F4770
Swissprot	O82132.1	4.1e-32	Dehydration-responsive element-binding protein 2A
trEMBL	A0A5P1ETL2	2.1e-49	AP2/ERF domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G05410.1	69.00	6e-32	134	DREB2;DREB2A	DRE-binding protein 2A

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G06599	AT5G05410.1	100	30	1	7	106	72	170	69.00	6e-32	134
AfisC2G06599	AT5G05410.2	100	30	1	7	106	72	170	69.00	6e-32	134
AfisC2G06599	AT2G40340.1	152	65	2	1	145	59	199	45.39	2e-29	125

Ortholog group

Species	Genes
Allium cepa	g74663.t1
Allium fistulosum	AfisC2G06599
Allium sativum	Asa5G04281.1; Asa6G03993.1; Asa6G05359.1
Arabidopsis thaliana	AT2G40340.1; AT2G40350.1; AT5G05410.2
Oryza sativa	LOC_Os01g07120.1; LOC_Os01g07120.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	12	62	53.1	2.5e-14

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005730	C	nucleolus
GO:0009409	P	response to cold
GO:0009414	P	response to water deprivation
GO:0009555	P	pollen development
GO:0009651	P	response to salt stress
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009873	P	ethylene-activated signaling pathway
GO:0010200	P	response to chitin
GO:0010224	P	response to UV-B
GO:0010286	P	heat acclimation
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0034605	P	cellular response to heat
GO:0042542	P	response to hydrogen peroxide
GO:0043565	F	sequence-specific DNA binding
GO:0048316	P	seed development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09286	EREBP; EREBP-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network