Detail information of AfisC2G06600


Location
GeneChrStartEndStrand
AfisC2G06600chr210621303951062136663+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020273407.10.0e+00SNF2 domain-containing protein CLASSY 1-like
SwissprotQ9M297.14.3e-217Protein CHROMATIN REMODELING 38
trEMBLA0A5P1E9R70.0e+00Helicase ATP-binding domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT3G42670.145.330.0 677CHR38;CLSY;CLSY1chromatin remodeling 38

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag414766.t1
Allium fistulosumAfisC2G06600
Allium sativumAsa6G04004.1
Arabidopsis thalianaAT3G42670.1; AT5G20420.1
Oryza sativaLOC_Os07g49210.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00176.20SNF2_NFamily69392056.31.9e-15
PF00271.28Helicase_CFamily1071119049.15.5e-13

Gene Ontology
AccessionOntologyName
GO:0000775Cchromosome, centromeric region
GO:0005730Cnucleolus
GO:0006306PDNA methylation
GO:0006355Pregulation of transcription, DNA-templated
GO:0016246PRNA interference
GO:0043234Cprotein complex
GO:0043933Pmacromolecular complex subunit organization
GO:0050896Presponse to stimulus
GO:0060147Pregulation of posttranscriptional gene silencing
GO:0060966Pregulation of gene silencing by RNA
GO:0097159Forganic cyclic compound binding
GO:1901363Fheterocyclic compound binding

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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