Detail information of AfisC2G06830


Location
GeneChrStartEndStrand
AfisC2G06830chr210893030191089328249-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020245573.13.3e-302helicase-like transcription factor CHR28 isoform X1
SwissprotQ94BR5.12.7e-248Protein SNF2-RING-HELICASE-LIKE 2
trEMBLA0A5P1EA549.2e-302Helicase-like transcription factor CHR28

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT1G50410.157.940.0 935SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
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Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00176.20SNF2_NFamily271658224.51.4e-66
PF00097.22zf-C3HC4Domain69673223.92.6e-05
PF00271.28Helicase_CFamily82191655.17.7e-15

Gene Ontology
AccessionOntologyName
GO:0000166Fnucleotide binding
GO:0005515Fprotein binding
GO:0000724Pdouble-strand break repair via homologous recombination
GO:0003677FDNA binding
GO:0006366Ptranscription from RNA polymerase II promoter
GO:0004386Fhelicase activity
GO:0046872Fmetal ion binding
GO:0016567Pprotein ubiquitination
GO:0005737Ccytoplasm
GO:0016887FATPase activity
GO:0006355Pregulation of transcription, DNA-templated
GO:0006397PmRNA processing
GO:0008380PRNA splicing
GO:0031981Cnuclear lumen
GO:0043234Cprotein complex
GO:0043933Pmacromolecular complex subunit organization
GO:0044427Cchromosomal part
GO:0045934Pnegative regulation of nucleobase-containing compound metabolic process
GO:0080188PRNA-directed DNA methylation

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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