result

Gene information

Detail information of AfisC2G06836

Location

Gene	Chr	Start	End	Strand
AfisC2G06836	chr2	1090694283	1090696973	+

Sequences

CDS

Protein

Gene

>AfisC2G06836
ATGAACAGATCAGTTGTTGGAACAATTGAGGGTAAATTTGATCAAGGTTGCTTTGTGTCTATTACTTTGGACTCACAGAAGCTTAGAGGTGTTGTTTTTCACGTTAAAGAGCAACCAGCAGCTGCAAATCAAGCTGCAGAATCTTCAGGTCCTGCTAGGCGTAGGAGAAGGAAGAAAATAAAGCAGGACCCTACTCATCCAAAACCCAATAGAAGTGGGTACAATTTCTTCTTTCCAGAGCAGCATGCTAGGCTAAAACCACTTAATCAAGGGAATGACCGAGACATCAGTAGACAGATTGGGGAGTTGTGGAGCAAACTAACAGATTCAGAGAGAGCTGTATGGCTAAATTTATTACCATTTACCTTTTCAGTTAATTTTTTATAGTGTTTATTGTCACCAAACGACTCTTCTCTCGAAAATTGTAGTTGGTTAATAAATATTGAAGATAACGTCACCATTTGGAGTGAATATCCTTTGTCCCAGTTTTCCTGTCCTGGTATGACCAGCCGCATCACAACTATTCAATAATAACAATAAATTAAGGCCATTTCTGAAAGTGGAAATAAAATCGATAAGGAAAGTTTTTTTTTTAGGTTTTGAAATCAGAAAAATTACCAAAGTGAGAAGAAACTTCCTCTTGTGAAAGTGCAATAAAATTACTCATCTAAACCTTATTTTTGTCAACATAGTTTTAACATCTTGCATGTGCAACCATTTAAAGAATCTATATCAATATATACTGTGACTGAAGATACTATATTGTAAGTCTTTCAATTTGGGCACTTGTATTTATGGAAGTTTCCCAATTTATCAAAACCAAAATCAAATATGGGTTAGCAATTTGAAAATTTTCCAGATTTAAGGATTTAACGAGATATAAAAGGAAATGAGAGATTTTGAGGAAGCATAATATTTGGGTATGGGGCCCTGATTTTTGTTAAAACATAAAAGGGAATTTGATTCTTTTAAAATATAAATGATCCAGTGCAAAAATCTAATGTTCCAATTTTGTTTCTGCCCTCTTGACATCCCCATTACCATTTTGTTTTACCTCTTATCAATAGCTTAAATTTAATTAAACTTTCATAGAAAAAAAATGAAAAATTCAGATGTTGGGATGAGCTCAAGATACTCAACTGCTTTATATAATTAGTGGTAAAATCACACCTAAAGAACTTTGATCAACTGGAATTACTCAGGGTGCAATTGAACTAATTCTAAAATAACAAAAAGGCTGTGCATCATGTCAAAGAATAAATAGCTTAGTTATTAGGCAAACCAAAGCTCAAGGGTAAAACTCTTTTGCTGTACAATTTAATCTTAGGGACATTTTTTCAAACACTCGAAAAAGTTTCAAAATTCACTTCCGTCCCCTCTCAAAAAACAGTTTCATAAAACACCACCATCAAATTTTCCAGCGAAATATGCAGTTTATACCACGTATATTTACAGGCAGAACTGCAAACATTTGCAATTCTAAATGCATACTTTTATAAAATGAAAATTTTGTAGTCGACACTGCAAGAATATGTATTCCACGCTGTAAAATTTTCATTCTACAAAAATATGCAGTTATAACCACAAATATTTGTATTTCAAACTGCAATTATTTGCAGTCAAATATTAATCTTCAAAATCAATATTTAAAATCCTTACTTTCAAATCATTTTTAAGCTATCTTTGAATATCAATCATTGAACTGAAATTCGATATTAATGATGTATTCTTGAAATTACCGAACTCCATTATTAGTGTTCTATAGCATTCATGAGGAATTTTCAATAATGTAAAATTGTTCTAAAAGGAGTTTGGTAGTTTGAAATCCAAAGGAAAAAATCGAAAGGTTGAATTATTGAAAAACTTATAAGATGTTTAATTAATGAAGTTCTGTAATTCCGAATTAAACCTCTTTCAAATTTGAAATTGTATCGAATATTTTGAAAATGGGAATTATACAGTAAAACCCCTTCTAGATCAATAAACGATTGAATAAAAGGAGATGTATGAACCTCTATATGATGCGAATTTCGAATAAACGAAGATATGATACCATTGCGTAACGTAATATTTTTTCAGTTATTCTTTTGACTCAATGCATAGAGATGGAGTGTCACAGTTGGTAACTTATTTTGAGAATGGTTTTTCAGGTATTAAGTTAGGAAAAAAGGGACGGATCCTAAATTCGACTTAATTTTATATTACAGGTTTATCAAGAGAAAGGAGCAAAAGATAAAAAGAGGTATGTAAGCGAGATGGCTGAGTATCGAGGCGGCTTAAGACACACTATAGGCACTGCTGCTATAAGCAATGTGATGCCACTTCAGCAACACCCTGCTGAGATAACATCAGATAAATCGGAAGATTCAGATTCAAAATTAGACATAGAAGCGACGATGATGAAGAGGCTGAAGCAGGAGATGATGTTAGCGGCTCTAAATAATAGCATAGAATCTGAAGTCAAAGAATCCGAAGAAGACGAGTCTGAACATACTATATCGCATAAAATCACTGCTGTTGCAGAGTCTACAAGCCTTAATGATACGTCCTATGAAGGCGATGGTGGATTTGAATTCAAAAAAAGAAATGAAGAATTGAAGATGATATGCAAGTAGAGACTGAGCCTGAGCTTCAAATGAAAGGGAGGATGTTCAGTTTAAGAAAGAATCTGAGCCCTCTAACTATTGCCTG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008778105.1	1.1e-39	high mobility group B protein 15-like isoform X2
Swissprot	Q9MAT6.1	1.2e-30	Nucleosome/chromatin assembly factor group D 15
trEMBL	A0A8B7BJ30	7.8e-40	high mobility group B protein 15-like isoform X2

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G04880.1	44.32	1e-35	147		HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G06836	AT1G04880.1	185	77	3	4	165	177	358	44.32	1e-35	147
AfisC2G06836	AT3G13350.1	148	69	3	5	145	169	314	47.30	3e-32	135
AfisC2G06836	AT1G76110.1	149	67	3	4	138	179	326	44.97	2e-27	119

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00505.16	HMG_box	Domain	67	134	47.6	1.5e-12

Gene Ontology

Accession	Ontology	Name
GO:0000400	F	four-way junction DNA binding
GO:0005634	C	nucleus
GO:0006351	P	transcription, DNA-templated
GO:0008134	F	transcription factor binding
GO:0009846	P	pollen germination
GO:0009860	P	pollen tube growth
GO:0010197	P	polar nucleus fusion
GO:0044212	F	transcription regulatory region DNA binding
GO:0019760	P	glucosinolate metabolic process
GO:0043565	F	sequence-specific DNA binding
GO:0090406	C	pollen tube

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network