result

Gene information

Detail information of AfisC2G06959

Location

Gene	Chr	Start	End	Strand
AfisC2G06959	chr2	1115825212	1115827212	+

Sequences

CDS

>AfisC2G06959
GAAGACAATGAACTTGTGGAACTTTCATGGAAAAATGGTCATGTAGTTATGCAAAGCCAAAGTAATCGAAGGCACCAAGAACATACACAGCCATTTAAAAGAAATGACCACAAACCTAACAGTCCACCTATAATTGCATGCAATTTAATTCAAGAAGATGACTGGTTACACTATGTAGTGGACGATTCTTTAGAAAAAGAGTTTGATTCTGACTTGCTTCAAGATATTCCAGTTATCGCTATTAACAGTAGCATTAAGAATGAAGAAGATATGTCACCTCCAAAATCTTCTCAAATCACTTCTAGGTTAGTAAACGCTGAACCTGTAAATTCTACCATTGGATCAAGTGCATGTGGTAGCAGTCAAGCTCAAAATCAAAATGAGGTAAGCTACGTATTGAGCAAAGAGGTGAAAAAGAATGGCATATTGAATTTAACACATGATGAAACTAAAGTGAGCATATTCGATACTACTTTGACTTTCTCGTTTGGGCAGCTGAGTACTAGTAGTTTGAATCGCAAAAGGAAGGAAAGAGATGGAGATGATCCTGAAAGTCATGGCGAGGAGGCTGAATATGAGTCGACAGAAGCAAAGAAAACAACTAAACAGAAATCATCATCACGAAAAAGTCGTGCAGCTGAAGTTCATAATTTATCTGAGAGGAGAAGGAGAGACAGAATCAATGAAAAGATGAGAGCATTGCAGGAGCTCATCCCTCATTGCAACAAGTCGGACAAAGCATCAATGCTAGACGAGGCAATTGAGTACCTAAAGTCATTGCAACTACAACTTCAGTTAATGTGGATGGGTAGCGGAATGGCACCAATGATGTTTCCTAATGTCCAACAGTACATGTCTCGAGTTTCCATGCCTTCTAATCAGTTTCCATTAATAAGAAGTCCTTTGGTCAATCCTTCCCCAAATCAAATGCCAATGCGTTCATCTCCAAACTTAAATCCAATTAATTTCCCCAGTCAAATACAAAATGCCCACATGCCCGAATCATATGCTCGGTACTTTGATCATCCTCACATGCAAATGCCTTCTCAGGGTATGAATTTATGCTCATATGGTATCTCACATGATGCAGCAAAATCAGACACCAGTGGAAGTTGGAAGCAATAG

Protein

Gene

>AfisC2G06959
GGAAGACAATGAACTTGTGGAACTTTCATGGAAAAATGGTCATGTAGTTATGCAAAGCCAAAGTAATCGAAGGCACCAAGAACATACACAGCCATTTAAAAGAAATGACCACAAACCTAACAGTCCACCTATAATTGCATGCAATTTAATTCAAGAAGATGACTGGTTACACTATGTAGTGGACGATTCTTTAGAAAAAGAGTTTGATTCTGACTTGCTTCAAGATATTCCAGTTATCGCTATTAACAGTAGCATTAAGAATGAAGAAGATATGTCACCTCCAAAATCTTCTCAAATCACTTCTAGGTTAGTAAACGCTGAACCTGTAAATTCTACCATTGGATCAAGTGCATGTGGTAGCAGTCAAGCTCAAAATCAAAATGAGGTAAGCTACGTATTGAGCAAAGAGGTGAAAAAGAATGGCATATTGAATTTAACACATGATGAAACTAAAGTGAGCATATTCGATACTACTTTGACTTTCTCGTTTGGGCAGCTGAGTACTAGTAGTTTGAATCGCAAAAGGAAGGAAAGAGATGGAGATGATCCTGAAAGTCATGGCGAGGTTATTTAATTTCTATTTGCTTTTCTACATCTGATTAAATGAGATATTTTTCTAGCATCCGGTCAAAAATTGGGGTATAAGTAAAATATGAGATCGAATTCCTTTGTTAATTACCCATTGTATATGTTGTGAGATCAATGCATATTCATTTTGAAATTACAGAGCTTCCGGTTTATACAAGTATCAAGGAAGAGGTCCATTGTCATTTTTTGGCTCTTGTCTGGCTACAAGATTGAAAGAAAGTTGAATTTTGTTTTGTCACAAATATTAAAGTTTTTTTATTTTAATATCTTTAGGAGGCTGAATATGAGTCGACAGAAGCAAAGAAAACAACTAAACAGAAATCATCATCACGAAAAAGTCGTGCAGCTGAAGTTCATAATTTATCTGAGAGGGTCAGCATATTTTGACATATAGAACTAGATTTGATTACATATGAATAAAGACACTCATTTTTTAATTATTCAAAAGCAGAGAAGGAGAGACAGAATCAATGAAAAGATGAGAGCATTGCAGGAGCTCATCCCTCATTGCAACAAGGTAAAAAAAGATAACAAAAATTATTAATATATACGTAGTTAATTTGACAAGTGGTCATAATATTAAAGTTATATAAGTAATGATCATATTTCAGTCGGACAAAGCATCAATGCTAGACGAGGCAATTGAGTACCTAAAGTCATTGCAACTACAACTTCAGGTACTATAATTTCAAGCCATCTTTTACCCAACATATCAATTTAACAGTTAATTTAAGCTCAGTCCTAATCCAACATATGATCATCGTTGCCTTAATTAGTTAATGTGGATGGGTAGCGGAATGGCACCAATGATGTTTCCTAATGTCCAACAGTACATGTCTCGAGTTTCCATGCCTTCTAATCAGTTTCCATTAATAAGAAGTCCTTTGGTCAATCCTTCCCCAAATCAAATGCCAATGCGTTCATCTCCAAACTTAAATCCAATTAATTTCCCCAGTCAAATACAAAATGCCCACATGCCCGAATCATATGCTCGGTACTTTGATCATCCTCACATGCAAATGCCTTCTCAGGTTTGTGGTCCTATCTTTGCAGTTTTGTAATGCTTTTTGATGTATATTAAATTGTTGTTTTTATTTAAATTGTTATGATGACAGGGTATGAATTTATGCTCATATGGTATCTCACATGATGCAGCAAAATCAGACACCAGTGGAAGTTGGAAGCAATAGTTTGCCAACAGCTGCCATTCCTTTCCAAAATATTCAGAATGGTTGATGGGGTAAGTGATGATATAAATAATTTCATGCTCTTTATAATATAACTTTTAACTTTTTGTCTAAATGACAAGTTGTAGCAGTATGACCCTCTGCTATATATTTTTATTTTTCATTACTATACTTACAATTACAGTGCAATAATTCAATGTCAAGGGCATTCATTTGGTATTTGTGG

Functional annotation

Database	accession number	e-value	annotation
nr	ONK74413.1	1.2e-66	uncharacterized protein A4U43_C03F5960
Swissprot	Q10CH5.1	3.3e-29	OsPIL1
trEMBL	A0A5P1F9J8	8.7e-67	BHLH domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G59060.1	36.27	2e-42	170	PIF5;PIL6	phytochrome interacting factor 3-like 6

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G06959	AT3G59060.4	397	187	15	2	351	26	403	36.27	1e-42	170
AfisC2G06959	AT3G59060.3	397	187	15	2	351	26	403	36.27	1e-42	170
AfisC2G06959	AT3G59060.2	397	187	15	2	351	26	403	36.27	1e-42	170

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00010.23	HLH	Domain	215	261	51.6	5.9e-14

Gene Ontology

Accession	Ontology	Name
GO:0001046	F	core promoter sequence-specific DNA binding
GO:0001228	F	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0006366	P	transcription from RNA polymerase II promoter
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0046983	F	protein dimerization activity
GO:0007623	P	circadian rhythm
GO:0042802	F	identical protein binding
GO:0009409	P	response to cold
GO:0009506	C	plasmodesma
GO:0009536	C	plastid
GO:0009567	P	double fertilization forming a zygote and endosperm
GO:0009605	P	response to external stimulus
GO:0009641	P	shade avoidance
GO:0009704	P	de-etiolation
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0009742	P	brassinosteroid mediated signaling pathway
GO:0010017	P	red or far-red light signaling pathway
GO:0010047	P	fruit dehiscence
GO:0010114	P	response to red light
GO:0010187	P	negative regulation of seed germination
GO:0031539	P	positive regulation of anthocyanin metabolic process
GO:0048440	P	carpel development
GO:0048583	P	regulation of response to stimulus
GO:0048767	P	root hair elongation
GO:0080113	P	regulation of seed growth

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K16189	PIF4; phytochrome-interacting factor 4	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network