result

Gene information

Detail information of AfisC2G06983

Location

Gene	Chr	Start	End	Strand
AfisC2G06983	chr2	1120351294	1120352487	-

Sequences

CDS

Protein

Gene

>AfisC2G06983
ATGGGAAGAAATCCAATCAATGCAAATGCAAATAGTACTAGCAGACACATAGAAAAACAAAGAAAAGGGCTCTGGTCTCCAGATGAAGATGAGAAGCTCATCAACTACATTAACACTTTTGGTGTTCAATGTTGGAGCAATATCCCAAAACTAGCAGGTAAATTTGTCAATAAATCATTCATTTTGTTCTTCTTTTCTCTCTTCTCTTCATATATAACTTGTATTCATTCAGAGAAACTTGATTTTCTTTACAGGATTGCAAAGATGTGGTAAGAGCTGCAGGCTTAGATGGATCAACTACTTGAAGCCAGACCTTAAAAGAGGCCATTTTTCTCCTCAAGAAGATGAATATATCATTGCCCTACATGAAGCCTTAGGAAACAAGTACATTATTTCAACTTTCTCTGCATCATCTTTTCATTTATTTACAGTTTTATACATTGTTGCAAACAAGAATCCTATTCATTTATCATCTTTCTTTTGCCGTCACAAGAAAACCAACGACAGAACCAGCTTTTGAAACAATCACAAAAAAAGTAAAACGATAAAGAATTTGCCATTTGAATGCACTCTTGCAATAAAACAGTAATAGAGTTTGCCGTTTTATAAACTGTTGTTCTGTTCAGTTCACTAGGTACAGAATCAAATTGAACCAGTCACGTGTAACTACAAAAGTCACAGTTGCGTTGTGGCTAGTTCAATTTAGTTTTTTAACTTAACAAGTCATTGCTTGTCATGCTGTTATAAAGGAATTTAATCGAAATTTCAGGTGGGCTAAGATTGCATCACTGTTACCAGGAAGAACCGACAACGAGATCAAAAACCATTGGAATTCCAGGCTTAAAAAAAGATCTAAATTACATGATCAGAAACTTAAACCTAAATTCGATCCTTTTCCAATTGAATCACAGATGAATGCAGTTAATACAAATATGGGAGAAGACATGAATATTTATGAGGAATTACTACAATGCATCAGTCCATCTGATCAAAAGGATGAATTGCTAACAAAATATGATCAGGCTGGTGAAAGTTCAACTGCAAAGAGCAGTAACTCAAGCAATGTGAGTGAAATCGATCAAATTAGCTGCTATTTCATTGATGAAATGATTATGTTCGCTCAAGTTGAAAGCATTTTAACGCAAGATTTCAGTTGAGTTGGATATATCTGTGGGTTAGTCGCAGTTTTGATTA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008796017.1	8.3e-47	transcription factor MYB61-like
Swissprot	Q8LPH6.1	2.4e-43	Myb-related protein 86
trEMBL	A0A8B7CC05	6.0e-47	transcription factor MYB61-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G13890.2	72.64	4e-45	177	ATMYB26;MS35;MYB26	myb domain protein 26

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G06983	AT3G13890.2	106	29	0	18	123	10	115	72.64	4e-45	177
AfisC2G06983	AT5G26660.1	132	47	1	18	149	10	139	62.88	2e-44	175
AfisC2G06983	AT1G09540.1	108	32	0	18	125	10	117	70.37	1e-43	173

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	22	69	53.8	1.4e-14
PF00249.28	Myb_DNA-binding	Domain	75	118	54.0	1.2e-14

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0001944	P	vasculature development
GO:0050832	P	defense response to fungus
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009800	P	cinnamic acid biosynthetic process
GO:0009866	P	induced systemic resistance, ethylene mediated signaling pathway
GO:0009901	P	anther dehiscence
GO:0010089	P	xylem development
GO:0010119	P	regulation of stomatal movement
GO:0010214	P	seed coat development
GO:0010224	P	response to UV-B
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0030154	P	cell differentiation
GO:0043565	F	sequence-specific DNA binding
GO:0048364	P	root development
GO:0071281	P	cellular response to iron ion
GO:0071732	P	cellular response to nitric oxide
GO:1900384	P	regulation of flavonol biosynthetic process
GO:1901348	P	positive regulation of secondary cell wall biogenesis
GO:1903086	P	negative regulation of sinapate ester biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network