result

Gene information

Detail information of AfisC2G07019

Location

Gene	Chr	Start	End	Strand
AfisC2G07019	chr2	1125820900	1125823450	+

Sequences

CDS

>AfisC2G07019
ATGGCGGCTGGTCGTTACCGTAGCAATTATAGGAAACACGAGTACAGGTCCCGAGAATTAGATTTAGAGATTTCTATGAAAAGTGGTAGGTACGAAAAAATTGAACAAATTAGGGCAAAATATAGGGAGGAAGATTTGAGAGAGGGAGTTTTGGTTAATGGCTTTGCTAAGTCTAAGAAATTTGTCGAGCGTGAGCCCGGTGAGTTGTCTAGTGATGATGAAACTGTCCCTTCTCACGATTCGACTTTGATAACTGGGAAAAGGAAGTTTCCAATGGATGTTTTTGAAGGTGAGGAAAACAACAACAAAACTAGAAACGAAATGGATAAGGAGTTTATAAGTTTTGTTGAAACAGAGGAAAATATGGAGTTTGTGCCTGCTAGACATATATTATCTTCTAGATGGGCTAACGAGAATGATAACGATGAAGAAAATCCAACTGTTAAAGAAGTTGTGTCCAAAAAGAAAAAAACTAGTCCTTTGGGATTGAATTCCGAGAAGACTTTATCAAAAAGTTGTAGTTCTAGTAGTAGTGCGAGCGACAATACGGACAATAGCGATGAAAATGGTACCTCAACAAAAACTAACTCTGACTCAGAAAAAAATGTGAATGATATAACAGAATTGGATTCTGAAAGAAGTATTAACATGCTTCAAGGGTGTAGGAACGTTAATGAATTTGAAAGGTTGAATAGAATCGATGAAGGTACGTATGGTGTTGTGTTTAGAGCTAGAGATAAGAAGAGTGGGGAAGTAGTGGCGTTAAAAAAAGTGAAATTGGAGAAAGAAAGAGAGGGTTTTCCATTGACTGCGCTAAGGGAGATTAATATTTTACTGTCTTTTAACCACCCTTCTATTGTGGATGTGAAGGAAGTTGTTATGGGTGATATGAACAGTGTGTTCATGGTTATGGAGTATATGGAGCATGATCTTAAAGGTTTGGTGGAGAGTATGAAACATCCATTTAGTCAGTCTGAAGTTAAATGTTTGATGCAGCAGTTGCTATCGGGCGTTCGTTATCTTCATGACAATTGGGTACTACACAGAGATCTGAAGACGTCAAATATTCTTATCAATAACTGCGGTGGACTAAAAATCTGTGACTTTGGAATGGCTCGTCAGTATGGGAGCCCATTAAAAGCTTATACTCAACTGGTGGTCACTTTATGGTACAGAGCACCAGAGCTTCTTCTAGGAGCCAAAAAATATTCAACTGCCATTGACATGTGGTCTTTAGGCTGTATTATGGCTGAACTTTTGACAAAAGAACCATTATTTCCAGGAAAATCTGAGATTGATCAGTTGAATAAGATTTTCAAAATTCTTGGTACACCTAATAAGAGTATATGGCCGGGATTTGTTGATTTACCTGGAAGCAAAGTTAAATTTGCTGAACAACCCTGTAACAAGCTTGGTGAAAAATTCCGTCGGACGGCAGCATATACACCATTTACACCTACGGCAGTGACTGCACGTCCTGTTCTTTCGGAATCTGGACTTGATCTGTTGAACAGACTACTTACCTTTGATCCTGAAAAGAGGATAACAGCACAAGAGGCTCTTGATCACGACTGGTTTAGGGAAGTTCCTCTGCCGAAATCAAAAGAGTTAATGCCAACATATCCTGCTCAACACGCACAAGATAGGCGTCTGAGAAGAGTTATTAAGAGCCCAGATCCTCTAGAAGAGTTGCGGATCAAGGAATTGCAGTCTGGTGTTGGAACTGGTGGATTATTTGGTTAA

Protein

Gene

>AfisC2G07019
CATCCAAGTTGCGCTTCCACAATTAAATAAATAAAAACTTTTAGAGCCAGCGATCGGATTTCTTCTCGATTTCAAGGTCAGATCTCTCGATTTTCAACCGATTTATCGATTACTTTGAATATAGTTATTTTGGTGATTCTTTTGGTATTGGTTAATTCTCGATTGAAAATCTAGGGTTACGTTCTTTTCCCAAATTAAAATTAAAATTTTAATGGCGGCTGGTCGTTACCGTAGCAATTATAGGAAACACGAGTACAGGTCCCGAGAATTAGATTTAGAGATTTCTATGAAAAGTGGTAGGTACGAAAAAATTGAACAAATTAGGGCAAAATATAGGGAGGAAGATTTGAGAGAGGGAGTTTTGGTTAATGGCTTTGCTAAGTCTAAGAAATTTGTCGAGCGTGAGCCCGGTGAGTTGTCTAGTGATGATGAAACTGTCCCTTCTCACGATTCGACTTTGATAACTGGGAAAAGGAAGTTTCCAATGGATGTTTTTGAAGGTGAGGAAAACAACAACAAAACTAGAAACGAAATGGATAAGGAGTTTATAAGTTTTGTTGAAACAGAGGAAAATATGGAGTTTGTGCCTGCTAGACATATATTATCTTCTAGATGGGCTAACGAGAATGATAACGATGAAGAAAATCCAACTGTTAAAGAAGTTGTGTCCAAAAAGAAAAAAACTAGTCCTTTGGGATTGAATTCCGAGAAGACTTTATCAAAAAGTTGTAGTTCTAGTAGTAGTGCGAGCGACAATACGGACAATAGCGATGAAAATGGTACCTCAACAAAAACTAACTCTGACTCAGAAAAAAATGTGAATGATATAACAGAATTGGATTCTGAAAGAAGTATTAACATGCTTCAAGGGTGTAGGAACGTTAATGAATTTGAAAGGTTGAATAGAATCGATGAAGGTACGTATGGTGTTGTGTTTAGAGCTAGAGATAAGAAGAGTGGGGAAGTAGTGGCGTTAAAAAAAGTGAAATTGGAGAAAGAAAGAGAGGGTTTTCCATTGACTGCGCTAAGGGAGATTAATATTTTACTGTCTTTTAACCACCCTTCTATTGTGGATGTGAAGGAAGTTGTTATGGGTGATATGAACAGTGTGTTCATGGTTATGGAGTATATGGAGCATGATCTTAAAGGTTTGGTGGAGAGTATGAAACATCCATTTAGTCAGTCTGAAGTTAAATGTTTGATGCAGCAGTTGCTATCGGGCGTTCGTTATCTTCATGACAATTGGGTACTACACAGGTAGTTTTTTTGTGTTGCTTTTATGCTAGATATACTTACCTTAGCGTGTTTTATACCTTATCCTGTTTCAATTGATTAATTTTTTTTATTATTATCAACCTTGTAGAGATCTGAAGACGTCAAATATTCTTATCAATAACTGCGGTGGACTAAAAATCTGTGACTTTGGAATGGCTCGTCAGTATGGGAGCCCATTAAAAGCTTATACTCAACTGGTGGTCACTTTATGGTACAGGTAAAATTTTGGATATTATTATTCATGCAATTTCCTTTGTTATGTCCTCAGTATCGTCCTCTTTTGCTTACTTTTATCTTACATTTGCAGAGCACCAGAGCTTCTTCTAGGAGCCAAAAAATATTCAACTGCCATTGACATGTGGTCTTTAGGCTGTATTATGGCTGAACTTTTGACAAAAGAACCATTATTTCCAGGAAAATCTGAGATTGATCAGTTGAATAAGGTATATGTCTGAACATCATTTGTTAGCTTTTTCAATCATTAATTGTGGCAAATTGTAATGTAGATCATCATTTATGCTGCAGATTTTCAAAATTCTTGGTACACCTAATAAGAGTATATGGCCGGGATTTGTTGATTTACCTGGAAGCAAAGTTAAATTTGCTGAACAACCGTATGTTTTCATTTCTTACTACATTACAGTTTTAAACTAGTCAAGACTCTTATGTAATGGTTTTGGCTGATTTATTGTTGATATTGTTACTAATTTTGTAATTTTGATGTTGCTTCTTCAGCTGTAACAAGCTTGGTGAAAAATTCCGTCGGACGGCAGCATATACACCATTTACACCTACGGCAGTGACTGCACGTCCTGTTCTTTCGGAATCTGGACTTGATCTGTTGAACAGACTACTTACCTTTGATCCTGAAAAGGTACCATACTATCATATGAGATTTTTTTTACTATATGCATGCATGTATGTATGTGTATACATACATTTTGTGATGTCATGTTTCCTCATGTATGTTGTGCTTCCATTGCAGAGGATAACAGCACAAGAGGCTCTTGATCACGACTGGTTTAGGGAAGTTCCTCTGCCGAAATCAAAAGAGTTAATGCCAACATATCCTGCTCAACACGCACAAGATAGGTAATTTGTTATCTTAATCATGGCACTCATATCTTCTTGTAATTTTTTTTGCATCTACTAATTATTTATATTATGGTGAAGGCGTCTGAGAAGAGTTATTAAGAGCCCAGATCCTCTAGAAGAGTTGCGGATCAAGGAATTGCAGTCTGGTGTTGGAACTGGTGGATTATTTGGTTAATTGGAT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020245512.1	6.0e-190	cyclin-dependent kinase G-2-like
Swissprot	A2XUW1.1	3.8e-157	Cyclin-dependent kinase G-2
trEMBL	A0A5P1E669	4.3e-190	cyclin-dependent kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G67580.1	59.89	6e-173	604		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G07019	AT1G67580.2	526	155	8	99	580	239	752	59.89	6e-173	604
AfisC2G07019	AT1G67580.1	526	155	8	99	580	239	752	59.89	6e-173	604
AfisC2G07019	AT5G63370.4	366	122	4	192	544	255	611	60.66	6e-133	471

Ortholog group

Species	Genes
Allium cepa	g258860.t1
Allium fistulosum	AfisC2G07019
Allium sativum	Asa6G04180.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	228	526	253.8	1.6e-75

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000398	P	mRNA splicing, via spliceosome
GO:0001558	P	regulation of cell growth
GO:0001824	P	blastocyst development
GO:0007155	P	cell adhesion
GO:0004693	F	cyclin-dependent protein serine/threonine kinase activity
GO:0005524	F	ATP binding
GO:0005737	C	cytoplasm
GO:0005681	C	spliceosomal complex
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007088	P	regulation of mitotic nuclear division
GO:0007089	P	traversing start control point of mitotic cell cycle
GO:0008285	P	negative regulation of cell proliferation
GO:0008360	P	regulation of cell shape
GO:0010584	P	pollen exine formation
GO:0016592	C	mediator complex
GO:0016607	C	nuclear speck
GO:0032953	P	regulation of (1->3)-beta-D-glucan biosynthetic process
GO:0034126	P	positive regulation of MyD88-dependent toll-like receptor signaling pathway
GO:0043410	P	positive regulation of MAPK cascade
GO:0044822	F	poly(A) RNA binding
GO:0050684	P	regulation of mRNA processing
GO:2001234	P	negative regulation of apoptotic signaling pathway

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K08818	CDC2L; cell division cycle 2-like	EC:2.7.11.22	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network