result

Gene information

Detail information of AfisC2G07271

Location

Gene	Chr	Start	End	Strand
AfisC2G07271	chr2	1169594476	1169599562	+

Sequences

CDS

>AfisC2G07271
ATGGGAAACTGCTTGTTCGGGATCGGAAAGACACCGTCCGAGCCCGATCCTCCGGCCTCCGGCGGCGAAAGCAAAGTCGCCGTCGTAGCTGCGGACGAGGAATCCACGTCATCGGCGAAGGGATCGGACGGGTGGCCCACGTGGCTGGTTGATGTGGCCGGCGACGCGCTCATGGGGTTGGCGCCACGACGTGCTGACTCGTTCCAGAAGCTGGACAAGATAGGACAAGGGACATATAGCCATGTATACAAAGCAAAGGATCTGCTTACTGGAAAAATTGTAGCACTAAAGAAAGTAAGATTTGATATCATGGAACAAGAAAGTGCAAGGTTCATGGCAAGAGAAATTTCCATTTTAAGAAAACTAAACCATCCAAACATTATCAAATTGGAAGGACTAGTCATTTCCCGAGTTTCACATTCTATATATTTAGTCTTTGAGTACATGGACCATGATCTTTCGGGGCTAGCCGCACTTTCTGGTGTCCAGTTCACTGAGGCCCAGATAAAATGCTATATGAAACAACTACTCTCCGGGCTAGAACATTGTCACGACAAAGGAGTGTTACATCGAGATATTAAAGGTTCGAACTTGCTCATTGATGATAAAGGGATTCTCAAAATTGCCGATTTTGGACTAGCTTCTACTTTTGATCCTAATAAAAAGCAACCCATGACTAGCAGAGTTGTCACTTTGTGGTATAGGCCTCCTGAACTTCTTTTAGGAGCCACTTACTATGGAATCGGTGTCGATTTATGGAGTGCCGGTTGCATTTTGGCAGAGCTCCTTGCACGCAAGCCGATACTTCCTGGAAGAACAGAGGTGGAACAATTACATAAAATATTCAAGCTCTGTGGGTCTCCCTCAGAGAAGTACTGGAAGAAATCAAAGTTGCCTCATGCAACCATGTTCAAGCCCCAGCAGTCATACAAGCGCTGCATCGATGAAACTTTTAAAGAATTCCCTCCATGTTCTATTCAACTCATTGAAACTTTATTATCAATCGATCCAGATGAACGTGGCACTGCTACTGCTGCTTTAAATAGCGAGTTTTTCACTACATCACCTATTGCTTGTGATCCTTCAAGCCTGCCTCACTATCCTCCAAGTAAAGAGATAGACGCCAAGTTGTGGGATGAAAAAGATCAAAGGCAAAAAAGAAGCAATAAAAAAAGAAATGGTGGTAAGAAAAAGAAATCTAGAGTCCACGATCGTAGTAGCAAAGCAATTCCTGCTCCAGAGGCGAATGCTGAGCTATCAGTTAACTTGGAGAGACGTAAGGTAATGGTGATGATGAATGCTACAAGCAAGAGCGAAAAATTTCCACCGCCACATCAAGATGGGTCAGTTGGTAATAATACTTCAGTGTCCTTTGGTGCTCCTGGCTATTAA

Protein

Gene

>AfisC2G07271
ACAATATAAACCCTGCCTCATTTCCCTCTTCTCATCACACACACTCCGTTCGCACTCCACCACAGCCAAATAACTCCCAAAACCTAACATGACCGGCGGTGCCCACAACCTCTGAAGGGTATTCCTGCAAGCTTCTCAATGGGAAACTGCTTGTTCGGGATCGGAAAGACACCGTCCGAGCCCGATCCTCCGGCCTCCGGCGGCGAAAGCAAAGTCGCCGTCGTAGCTGCGGACGAGGAATCCACGTCATCGGCGAAGGGATCGGACGGGTGGCCCACGTGGCTGGTTGATGTGGCCGGCGACGCGCTCATGGGGTTGGCGCCACGACGTGCTGACTCGTTCCAGAAGCTGGACAAGGTAGAATTTGCGTTATTGAATTTTCTGTTGTTTTATTTTTTATTTTTTTATGGTGTGAATTGTAAATATGTTGAATGGATGAGGGTGATTTGGGAACGTTGATGGAGTGGACTTTTACGGTTATATTATAATAGTTTTAAGTTCGTCATGCTGTTCTGGATGGGCATGGACGAAATAAAGACGACTTCAGTCTAAATTTGACTATATTTTATCCCTTTTTTATTTGAAAATTTGAACAATTTTCTTTTTTGAAATTTCTAAAATTGTCAGAACTGCTGGTTGTAAAATTTGCAGAAAACAAATAAATAACTTTTATAAAATAAATAAATAAATAGGAACTTTTGTAAAACACTTCCTCATTAAAAAAAGAGTTTAAAACACACGCTTGTTTTTAGTTTTAGTTAAAAAGTGCAAATATTTGCAGAAAAAACTGCAAAATTAATGCTAATATTTGTAGGAAAAAACTGCAAAGATTTGCATTATTTCAAAAAAATTCAAGAAAATAAAAAAAATAGTAAGATTAAGTTCAGATTTAGTTTTTGATGAAAAACAAAAAACATGTTTTATTGAAAATAAAATTAGAGGTAATTTAAAGCATGTTTTTAGAAAGGTTTTTACTTATGAATTTGAAATTAAGGCTCCTAATTTCCACTAGATAAATTTTCCAATGTTAGCTTTTATGAAATTTCAAGCAATATGATAGGATTTATAGTTGAGGTAGTACAATGCCAATGTTTTAGCTTTCATGAAATTTCAAGCAATATGAGAGGTTTTATAGTTGAGGCAGTACAATGTTAGCTTTCATGAAATTTCAAGCAATATGAGAGGATTTATAGTTGAGGTAATGTTAGCTTTGATGAAATTTCAAATTTTGTACTATTTTCTTAATGATACTATTCGGCCACAGAATCCATATTTTAGTAGGCCAAAACAGATTAGAACATCAATCTGTTATTATCATTATTATATTTGAGATTACATTTGTGCTATAGATGGTAGATACATGTTCATGCACTTGTCTACCAATTGTATTGTTCTATACAGTTTTGCTTTTTCTGGTTATGAATAACATATCAATTTGATAGGAAAAAATATTCCAATTCTTGAAAGGGTTTTAGCTTTATATGTTTGCCAAAATTGGAGCATAGAAAAAGCATTCCAATTCTAAAATCTGGAATAGTCTATAGGTGTACCCTAGAATCTTGCAGCCCATTTTAAACTTGTATTTTTCTCATGCCCAAAAGTTAGAGGAATCTGACTAATTTCACTATCAGGAAAGCTCTTATAGTCTTATAGTCATATTCTTTCTTTCTTACTTTTCAGCTCAAACATACTGCTTCATTCATTATTTGAGTTGCACATGGTACATTTATTACCTTGCACCTAAACCTATTGTACTGTTGAAATATGCGGTCAGCTTTATTAAGGTCACATGTTCTAACTATCAAGACATATAATGTTGACATGACATGGTACTCATGAATGAGTTCTTTATATAATTATGTAGTGATTAATTTGAAAACTAATTGATGTATGGGTAGAAATGCCCAAAAAATGACACATATACTGTTTTTTTCTCCTGCAATTCATAACCAATATTAATGGTGTTTATGATTAGATAGGACAAGGGACATATAGCCATGTATACAAAGCAAAGGATCTGCTTACTGGAAAAATTGTAGCACTAAAGAAAGTAAGATTTGATATCATGGAACAAGAAAGTGCAAGGTTCATGGCAAGAGAAATTTCCATTTTAAGAAAACTAAACCATCCAAACATTATCAAATTGGAAGGACTAGTCATTTCCCGAGTTTCACATTCTATATATTTAGTCTTTGAGTACATGGACCATGATCTTTCGGGGCTAGCCGCACTTTCTGGTGTCCAGTTCACTGAGGCCCAGGTGACAAAATTTCACATCTCATAATATTATGCAATATTATCTATAACTCAAGAATTACTTTTTATTTTTTTCATAATAGATAAAATGCTATATGAAACAACTACTCTCCGGGCTAGAACATTGTCACGACAAAGGAGTGTTACATCGAGATATTAAAGGTTCGAACTTGCTCATTGATGATAAAGGGATTCTCAAAATTGCCGATTTTGGACTAGCTTCTACTTTTGATCCTAATAAAAAGCAACCCATGACTAGCAGAGTTGTCACTTTGTGGTATAGGCCTCCTGAACTTCTTTTAGGAGCCACTTACTATGGAATCGGTGTCGATTTATGGAGTGCCGGTTGCATTTTGGCAGAGCTCCTTGCACGCAAGCCGATACTTCCTGGAAGAACAGAGGTATTTAAAATGAAGTTGGAAATTTGTGGCAAGTGTCTTTAATTTTACAACATCTAAACTATTATGATTTGGGGTCTATTAAAGAACAACAAGGCTATTGTACTCGAAAAGCTTTTATTAAATTCTGTGAAAGGAACATAATTTTTTAAGGGTCCCCCGCAAAATCATGTGAATTCGAAATTTTGCACTCTTCCTCATTTTTTGACCATATATGCTTTGGTCATGGTAGCAATTCTCATTAAAGAAATACCAGTTGGAGAATAATCTCACATCTTCTAAATTCTGTAATTGTCTAATTGAAAATACTAATAGATCGCTCTTCACGTCGTTGAATTATTATTATTATTATTATTTTGGTAATTCAAGTGCTTCTCTAACAGTGTCAATTATTCGATCCCTTCTTTTTAACAGTACCTAGATATACTTAGAGGTGGTTTAAAAAAAAGGAAAAGGCAATAACCCCTTTAGCATTCACATTTTATCCACTAATTAACCTAAACTTTTTCTTGATTTAAAACTCTTATTCATTTGGATTGTGGGTGATGAATTATATAAGCAATTATATGGTAGTTACAACACATATTTAGTCTATACATGTATGTTAATTATATGTATAGCAACAAAGAAAGTGTATAAACATTGGCCTGATGGTAGTGATTTTCTCATTTTCTCAACAGGTGGAACAATTACATAAAATATTCAAGCTCTGTGGGTCTCCCTCAGAGAAGTACTGGAAGAAATCAAAGTTGCCTCATGCAACCATGTTCAAGCCCCAGCAGTCATACAAGCGCTGCATCGATGAAACTTTTAAAGAATTCCCTCCATGTTCTATTCAACTCATTGAAACTTTATTATCAATCGATCCAGATGAACGTGGCACTGCTACTGCTGCTTTAAATAGCGAGGTAAGTTATTTTTTTATTTTTATATATATATAAAAAAAACCCAGTGAGCCAAACTTTGCTTGTAAATCTTATAGTACATCTTACATATACCCATTATTGTTCCTTACGTTTATCATGTAATTCATGCAGTTTTTCACTACATCACCTATTGCTTGTGATCCTTCAAGCCTGCCTCACTATCCTCCAAGTAAAGAGATAGACGCCAAGTTGTGGGATGAAAAAGATCAAAGGTTGGAACTTATATACTCTTTTATTCAGATTTCAAATGCATACCTATCATAAATAAATAAATCAATAAATGGAGTCTGTGTTGTGAGTTTAAGTAGTTAACCGTGTTAACGGTACCACAACATGGCAAACAACAATTATACCCTCTTGAATTTCTTGTTAAACCCAACGACATTTCTGTCCTGATAATGCTCTAAATATATATATATTCTTTTGGTTCATGGTAGGCAAAAAAGAAGCAATAAAAAAAGAAATGGTGGTAAGAAAAAGAAATCTAGAGTCCACGATCGTAGTAGCAAAGCAATTCCTGCTCCAGAGGCGAATGCTGAGCTATCAGTTAACTTGGAGGTACTTTATTTTGAAATTATTATCTTAGTAGTGCGAATTCGAATTGATCTTATTAGCACATGTATGTTACATATTAGCTATGATCGTAGTTTTGATACCATTGTTAGCATTTTTAGATAATTACATGGTTTTTTACAAAATCCAATTGGTCAATGACACACACATCTTTAACAATAGTTGTAGTACGTTTGGTGTCACATTTCTTTGTGTCAGCGTGAACTATTAAAAACGATCCTTTCAGATATTAACAAATATTATTATCACTAAAATATGATCTAACAGTTAAACTTTCTTTACAAATTCAAAACATCACTCTACTAATATTACCAATTCTTAATATCATTTAAAAATAAGATATAGCAAATAAACTTTCCTTGCAAATTCGTTCTTTAGTAATTAATAATATGGATAAAAATTCAAACTAAGTAAAAACTGGATGTTGCAACTTAGATATGAAAAATTCAAACTAACCATGCATGATTTCAACGTAAAAATACGGCTAAATAATTATACAAATCATTTTCTCTTAAATGTGTTAAACATATACAATTTGTAGAAAAATAATTCACGTGCGGAGCACGTGCCGTGACGCTTGTGCGTGCGCGTGCGTATGATCTTATTTATATATCATAGCATTTTGGATGGCGTGACACAACAGCTGTCATACCAAGTGATCTTTGTAAATAGTAGTCATTTTATGTTTGTATAGGATCTTATTTATATATATCTCAACGCGGGACTACTATTTTTCATCAGATCTAACATAAAATTTGAATAATAAACATATGAAATGTCGCAAAATTGTTAATAATGTGTATATTTTCTTTAGAGACGTAAGGTAATGGTGATGATGAATGCTACAAGCAAGAGCGAAAAATTTCCACCGCCACATCAAGATGGGTCAGTTGGTAATAATACTTCAGTGTCCTTTGGTGCTCCTGGCTATTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_031105050.1	1.2e-180	probable serine/threonine-protein kinase At1g54610
Swissprot	Q9ZVM9.1	3.6e-166	Probable serine/threonine-protein kinase At1g54610
trEMBL	A0A5B7A1K1	2.2e-181	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G54610.1	69.38	2e-175	612		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G07271	AT5G50860.1	416	126	1	38	451	84	499	69.23	1e-175	612
AfisC2G07271	AT1G54610.3	405	123	1	44	448	94	497	69.38	2e-175	612
AfisC2G07271	AT1G54610.1	405	123	1	44	448	94	497	69.38	2e-175	612

Ortholog group

Species	Genes
Allium cepa	g135679.t1
Allium fistulosum	AfisC2G07271
Allium sativum	Asa6G04445.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	68	352	237.1	1.9e-70

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0002944	C	cyclin K-CDK12 complex
GO:0002945	C	cyclin K-CDK13 complex
GO:0009615	P	response to virus
GO:0005829	C	cytosol
GO:0004693	F	cyclin-dependent protein serine/threonine kinase activity
GO:0005524	F	ATP binding
GO:0005615	C	extracellular space
GO:0005730	C	nucleolus
GO:0005794	C	Golgi apparatus
GO:0006397	P	mRNA processing
GO:0007346	P	regulation of mitotic cell cycle
GO:0008353	F	RNA polymerase II carboxy-terminal domain kinase activity
GO:0010564	P	regulation of cell cycle process
GO:0016607	C	nuclear speck
GO:0019908	C	nuclear cyclin-dependent protein kinase holoenzyme complex
GO:0030097	P	hemopoiesis
GO:0030332	F	cyclin binding
GO:0042127	P	regulation of cell proliferation
GO:0043405	P	regulation of MAP kinase activity
GO:0043410	P	positive regulation of MAPK cascade
GO:0043484	P	regulation of RNA splicing
GO:0044822	F	poly(A) RNA binding
GO:0046777	P	protein autophosphorylation
GO:0048366	P	leaf development
GO:0048523	P	negative regulation of cellular process
GO:0070816	P	phosphorylation of RNA polymerase II C-terminal domain
GO:1903047	P	mitotic cell cycle process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K08819	CDK12_13; cyclin-dependent kinase 12/13	EC:2.7.11.22 2.7.11.23	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network