result

Gene information

Detail information of AfisC2G07287

Location

Gene	Chr	Start	End	Strand
AfisC2G07287	chr2	1171474203	1171475212	+

Sequences

CDS

Protein

Gene

>AfisC2G07287
ATGCTAAGGTATATTCTCTTATAACACTGGGTTATTGAATGCTGTTGCAGATTCGAAAGAGGAAAAAATCATCAGCAAGTGAAGGAAAGTTTAACCATGAATTTGCTTGTAGAAAGGTAACATTTTGCTTCAACAATTTCCTGCATTTTGCTCTGATTCAGTTTCACTAACCATCTTATAATGTATGCTTATTTAGAATCTCTTTACAAACACAACAATCGAGTCTTAGAAGTAGGACAAATCAGCTGCCAACACCAATTCTACTCTTTGGTAAACCAACTGCAATAAAGGAGTTGATACAAACAACAACATCAAAAATGGCAATGGAGAAATGCTTAGACTCTCAGTTGTGGCACGCTTGTGTTGGAGGTATGGTGCAAATGCCATTAGTTAACTCCAAAGTCTACTATTTCCCACAAGGCCATGCCGAGCATTCTCAATATCATATCAATTTTGGTAATTCTTCGAAGATTCCACCCTTTTTACTTTCCCAAGTTTCTTTGGTCAAATTCTTAGCAGATCCAGAAACAGATGAAGTGTTTGCGAAGATCCTTCTTGTAACGATCCAACATCATGAGCTAGATATCAATTAGGAAGAACAAGGAGTAAGCAATGCATCATTTGAACTGCATGAAAAGCCCTCTTCATTTGCTAAGACTTTAACTCGGTCTGATGCTAATAATGGTGGTGGATTCTCAGTCCCTCATTACTATGCTGAGACCATATTTCCTAAACTGGACTATACAGCAGATCCTCCAGTTCAGACCATTCTTGCTAAAGATGTGCATGGAGAGGTTTGGAAATTTAGGCATATTTATAGGGGTACTCCTAGAAGGCACTTGTTGACTACTAGATGGAGCAATTTTTTGAATCAAAAGAAGCAGGTGGCAGGAGATTCGATTATGTTCTTAAGAGCGGATGATAGTGATTTATGTGTTGGGATTAGAAGGGCAAAGAATGGTATTGGTTGTGGGCCTGAGCAACTCAAGAAACATAAGTACAGCTGTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020259737.1	1.2e-95	auxin response factor 18-like isoform X1
Swissprot	Q93YR9.1	1.6e-76	Auxin response factor 16
trEMBL	A0A5P1EYY5	8.8e-96	Auxin response factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G30080.1	66.52	4e-81	297	ARF16	auxin response factor 16

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G07287	AT4G30080.1	224	60	5	65	274	9	231	66.52	4e-81	297
AfisC2G07287	AT2G28350.1	233	73	4	66	281	1	231	60.52	5e-77	284
AfisC2G07287	AT1G77850.1	207	91	3	72	264	16	219	47.83	1e-53	206

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02362.18	B3	Family	164	265	62.1	3.3e-17

Gene Ontology

Accession	Ontology	Name
GO:0000987	F	core promoter proximal region sequence-specific DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007389	P	pattern specification process
GO:0009536	C	plastid
GO:0009734	P	auxin-activated signaling pathway
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009743	P	response to carbohydrate
GO:0010154	P	fruit development
GO:0010208	P	pollen wall assembly
GO:0031540	P	regulation of anthocyanin biosynthetic process
GO:0035198	F	miRNA binding
GO:0048366	P	leaf development
GO:0048441	P	petal development
GO:0048442	P	sepal development
GO:0048589	P	developmental growth
GO:0048829	P	root cap development
GO:0048830	P	adventitious root development
GO:0051301	P	cell division
GO:0052543	P	callose deposition in cell wall

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14486	K14486, ARF; auxin response factor	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network