result

Gene information

Detail information of AfisC2G07288

Location

Gene	Chr	Start	End	Strand
AfisC2G07288	chr2	1172280642	1172285570	+

Sequences

CDS

>AfisC2G07288
ATGAGTGAAACTATAAGCTTGGGGTCTCTTATCTCACAAGCTAATGACCCTCCTCAAACTTCTAAAGAACAACATAATATGATAAACTCCCTTTGTGAAATCAGAAAGAGTTTGAAAAGCATTCATACCTCATCAAGCCACAACTTGGAATCAAATGTCAGTAAATCATCAAAGATCGATGATGACATCAATATTGAGGTCCAGTCCCCAAATAATCCCATATGGGACTCACTCTTTTCCGACCAATTCGATTCCGATTTCACGCTGGTATACTCACCTAGAAAAGATTTTTTACTGTCTTCACCAAGAAAAGAATACATGATTTTCTCTTCTCCTAAAAGAGAATACTCGATTTCTTCTCCTAAAAAGGACTACATGTTTTCTTCTCCTAAAAGAGACTACATGATCTCTTCTCCAAAAAGAGACTACATGATTTCCTCTCCTAAAAGAGATTATATGCTTGCATCACCAAGGAAGACAAACATGGGTAGTACGAGTTCTTCAGTATACACACAAAGTCCACTCCATAGAGTATTTAACAGTTCCACATCGTACTCGTGTTCGATAGAAAATGATGTTCATAGAGAGAGTCTTGCATTGCCATCGATGGACACACTGTTAAATGAGTATATGAATTTCGATGAATCAAAGAACAATGTGGAAATCCAAAGGGGAATTGAGGGAATGAGTGTGACATTACTTGAGTGTATCAATTATGAAAATGGTTTAGGGTTGGGAGAGGAATTAGGAAGCAGCGTTATTCATGATGTTGTTTGTGAAGCACGCGCATGTCAAGGAATGCTGGGCTATGACCACAACGAACAGGAGCAAGACAATGGGATGCAGTTAGTCCACGTTCTTCTAGCATGTGCTGAATCTATCGCGAAAGAAGATTACAATACTGCCCGCTCCTTCCTACTACATCTGAGTAAACTAACCTCTCCTGTGGGTGACTCTATGCAACGAGTTGCCTCTTGCTTTGTTGATGCTCTGTATATGCGTCTATCTCCTCCTATTGCTCGCTTCCCACCTTCGCTTTCTGTATCCCTTGATACACTCAGGCTATATCAAATTCTTTACCAAGCCTGCCCATATGTAAAGTTTGCGCACTTCACTGCTAATCAGGCTATTTTCGAAGCTTTAGAGTTTGAAGATCGGGTTCATGTTATTGATCTGGATATTCTTCAAGGGTATCAATGGCCAGCGTTTTTGCAAGCTTTAGCAGCGCGCCCACAGGGCCCACCGACACTGCGAATAACTGGTATAGGGTACCCTGCAGAGATAGTCAACGAGACAGGAAGACACCTTGCTGAGTTGGCACACTCTCTTCGTGTGCCATTTGAGTTCCATGCTGCAGTAGTTGATCAACTTCAAGATCTTCGGCCACACATGCTGCACAGAAGAGTCGGGGAGGCACTAGCTGTCAATTCAGTCAATAAGCTTCATCGTGTCTCTGGACCCCACCTTGGAAACCTACTAGCAATGATCCGAGACCAAGCACCGAACATAGTAACCCTCGTTGAGCAAGAAGCAAGCCACAACAGCTCATCCTTCCTCTCCCGCTTCCTCGAAGCCCTCCACTACTACTCCGCCATATTCGACTCCCTCGACGCCACGTTCCCGTCCGACTCCTCCGCACGCGCCAAGGTCGAGCAGTGCCTCTTCCTCCCCGAAATCCGAAACATCGTCGGCTGCGAGGGCGTCGACCGGGTCGAAAGGCACGAGAAGCTCGAAAAATGGAGGAGGATAATGGAGAGCAAAGGGTTCAGCAAAGTGCCGTTGAGCCAGAACGCCCTGACACAGTCGGAGATTCTTCTGAGCTTGTACTCGTGCGATGGGTACAGGATTAGCGTCGATGATGGATGCCTGCTTCTGGGCTGGCAGGATCGGGCCATCGTTGCCTCTTCCGCGTGGAGATGCTAA

Protein

Gene

>AfisC2G07288
ATTAACTTTCATATCACCTCTAAGCAGTTGTATACACTACCACCTTGTAGAGAAGTGCAACATTAAGTTTAAGATGAGTGAAACTATAAGCTTGGGGTCTCTTATCTCACAAGCTAATGACCCTCCTCAAACTTCTAAAGAACAACATAATATGATAAACTCCCTTTGTGAAATCAGAAAGAGTTTGAAAAGCATTCATACCTCATCAAGCCACAACTTGGAATCAAATGTCAGTAAATCATCAAAGATCGATGATGACATCAATATTGAGGTCCAGTCCCCAAATAATCCCATATGGGACTCACTCTTTTCCGACCAATTCGATTCCGATTTCACGCTGGTATACTCACCTAGAAAAGATTTTTTACTGTCTTCACCAAGAAAAGAATACATGATTTTCTCTTCTCCTAAAAGAGAATACTCGATTTCTTCTCCTAAAAAGGACTACATGTTTTCTTCTCCTAAAAGAGACTACATGATCTCTTCTCCAAAAAGAGACTACATGATTTCCTCTCCTAAAAGAGATTATATGCTTGCATCACCAAGGAAGACAAACATGGGTAGTACGAGTTCTTCAGTATACACACAAAGTCCACTCCATAGAGTATTTAACAGTTCCACATCGTACTCGTGTTCGATAGAAAATGATGTTCATAGAGAGAGTCTTGCATTGCCATCGATGGACACACTGTTAAATGAGTATATGAATTTCGATGAATCAAAGAACAATGTGGAAATCCAAAGGGGAATTGAGGGAATGAGTGTGACATTACTTGAGTGTATCAATTATGAAAATGGTTTAGGGTTGGGAGAGGAATTAGGAAGCAGCGTTATTCATGATGTTGTTTGTGAAGCACGCGCATGTCAAGGAATGCTGGGCTATGACCACAACGAACAGGTTAGACTCGCCATCCTTGTCTTTTTTCTCACGCGGTTGGGTTGACCATATGAATTCTCATTTTTCAAATTTCTATCTTGAAACATAATTTGATGTCACTTTTAATATTTTCATTTTATGTTAATTTAGATCTTTCTTTTTATCATAAATATTATCTTTTCTTCTTATATTTTTTTTTATGTGTCAATGTCATCCAAGTCTGTTTTGTCTAATTTAAATCTGAAGCAGGAGCAAGACAATGGGATGCAGTTAGTCCACGTTCTTCTAGCATGTGCTGAATCTATCGCGAAAGAAGATTACAATACTGCCCGCTCCTTCCTACTACATCTGAGTAAACTAACCTCTCCTGTGGGTGACTCTATGCAACGAGTTGCCTCTTGCTTTGTTGATGCTCTGTATATGCGTCTATCTCCTCCTATTGCTCGCTTCCCACCTTCGCTTTCTGTATCCCTTGATACACTCAGGCTATATCAAATTCTTTACCAAGCCTGCCCATATGTAAAGTTTGCGCACTTCACTGCTAATCAGGCTATTTTCGAAGCTTTAGAGTTTGAAGATCGGGTTCATGTTATTGATCTGGATATTCTTCAAGGGTAATATCATCTAAACCACTTATTTCATAAATTACAAAAATATTTTTACATCTAGGTTTAAATTTTGTAGTTTATCTGAATAGAGTTGTTCAGTGGGTACTGCATATTCAATCATTTATCGAAAACTCTTTCACCAATTCTGAGTTCATTCAGTTGATTGCCTAAGTTGTTTTCAGTATGCTGATAATTTAACAGTATAGCTACATGGCACTTGTGTCAATAATATTAACAATTGTTTAAACAAAATCTTATACCCATGGCACATCAGTAGAACCTAAGCTACTTCAAATGAATGAAGTAAATTGTTGTTAAAATGTGAAACAGTTGATGTGTATTTAAGTGACCCTACCGCTAATAATCTGGTTTAAAACAAAGGTAAAAAAACACTCTGCCATTAGATCAAGGATCAAATGTTGCATTTTAGCAGAATTGAATCTACTAGAATAGTTCAGTAGGCAATTTTTAGTGCCATCAAAAACTTGTTCGTGCAAAAGTTTTTTCATACGCTTATTAGTATTTGCGAAAACAATTATCTTTTCAAAATTGCAGTTTGTGATATAAAGAGCAAAACATTGATCAATAAACATTAGATCTTTAATCTAATGATCCGAGTTCAAAGGTGTTTTATTGTTATTGACCAGAGTATGTGAGCCTTGTCGAATACTAAACATGCAATGTGATTTCTTTCATGATAGGTATCAATGGCCAGCGTTTTTGCAAGCTTTAGCAGCGCGCCCACAGGGCCCACCGACACTGCGAATAACTGGTATAGGGTACCCTGCAGAGATAGTCAACGAGACAGGAAGACACCTTGCTGAGTTGGCACACTCTCTTCGTGTGCCATTTGAGTTCCATGCTGCAGTAGTTGATCAACTTCAAGATCTTCGGCCACACATGCTGCACAGAAGAGTCGGGGAGGCACTAGCTGTCAATTCAGTCAATAAGCTTCATCGTGTCTCTGGACCCCACCTTGGTAAATTTTATTATCGTACTATTTTATAATACAATCATATGTGTGGGTGTGTAATACTAAACTGTATAAATTTGCATTGTTTATAGTTTGAAAACAAATTTCATCAAACTACTACTAACATTTTCTAGGAAAAAAAATTCCATTGCAAAATTAACAATGATTAGGAAATTTGGGAATTGGTAAATTGACTTAAGTTAGTTTGATCAATTCGATGAATTTATTTTCTACATTTCTTCAGTATTTACTTTAATTTCTTTAATTTATCACCAGACAGCCTTTTGCTTTTCCTGCATGTCCTAATCAACCTCACTACCGTTGTGGGCAGCTCCTTTTTTCTTTTCCTGCATGAATTGTTGGCATCTCTTGCGAAATTTCATTTTAAATTTCTTCACTTAATAACAGTCTAACCAACGAAATCCATGTATTGAGTTGATTGCCTGCTCTGAGGGTAGGATCGGAGTAGAAAAATACATGAATCTGGACCAAACTGAATAAACTTTTAATGGTTTTGTTTAATCAACGGTGCATTTTAGCAAAATTCATTTCAGCTACAGTGCATTGTACAAAAATCCTAAAATCTCATGGTTTGGATCTCATTTTGAATTTAATCTCTCCAATCTCGATTTAATTCTTAAATTGTGATTCAGAACCCAATTGAATTTGCTATTGATAAAAAAATCTATCAATTAATGTTGAAATCAAAAATATCAAAGTATTAATATGCATGTATAAATTAAATTTTGTCATTACCTAGAAAATAATATCATAAAACAGTTTTAGGTTTAAATGTAGAAGCTTAAACATCAAAATTTTAAATCAGTTACAAAAGTACAAATGTTGAGAAAGAAGAGTCAACGTTTCCACATACATGGTATTTGATAACCAATGTAGAGTCAATGATTTGAACTTGCAATTCAAGATTCAAATCAAGTTTCAATATAAAATTTAAACCTTACTATTTGTGATTGAATATTGCTACCATGGCAAAAAATAAATTTGTCACAATGTAAGAATACTAAAATTTGAGGAATTCGTGGGTACTATTTAATTTACTGTGTGGTCTCTAGTGAATTTTTGTTTGTGGTGTAAGATTTGACAAAACTAAAGGCTATGTTGGTTTTATTTTGAGTTTTGTGTTTTGCGTTTTCAAAATTAATTACAAAATATAAGAAGAGCGGACAATGATGGAAGGATGACGGAGTGGACGGTGAGACGACGTAGGGATGAAGGGACGGTGAAGGGATGGATCTTTTTTGGTACTTTTGTTATTTCCAAAACATAGAAAACAAAATAAATATGTTTTCCATTTTGTATGTTAACTTCATTTTTTAAATTGATTGTTTTTCAAAAAATACATGCATCATGTGCGTTTTTGTTTAGTTGAAAACTCAAAACTAAAAATGACAAAGCCAACCGGGGTCTAAAATTTTGTCATTACCTTTTGTGATTTTACTCCCATTCTGAAAATCTTATTTACAACTTTTGATATTTTTTTCCTCTTCCAAATTCATTTATCTTGCACTTTTTTTTTTTTGCACAAGTAGTCATGTAAAATGCTAAGATGCCTATACTCAATATATTTTAATAGAGGTTTAGTCTACCATCACACTTCTCATTCACCATCTCAGCGTTTCGATCAGATGAGCTATATTTCATTCAGTATACTAACCAACTTATACACAACAGGAAACCTACTAGCAATGATCCGAGACCAAGCACCGAACATAGTAACCCTCGTTGAGCAAGAAGCAAGCCACAACAGCTCATCCTTCCTCTCCCGCTTCCTCGAAGCCCTCCACTACTACTCCGCCATATTCGACTCCCTCGACGCCACGTTCCCGTCCGACTCCTCCGCACGCGCCAAGGTCGAGCAGTGCCTCTTCCTCCCCGAAATCCGAAACATCGTCGGCTGCGAGGGCGTCGACCGGGTCGAAAGGCACGAGAAGCTCGAAAAATGGAGGAGGATAATGGAGAGCAAAGGGTTCAGCAAAGTGCCGTTGAGCCAGAACGCCCTGACACAGTCGGAGATTCTTCTGAGCTTGTACTCGTGCGATGGGTACAGGATTAGCGTCGATGATGGATGCCTGCTTCTGGGCTGGCAGGATCGGGCCATCGTTGCCTCTTCCGCGTGGAGATGCTAATGTAATGGATGTAATCGCCTGGGTCAAAATTTCTCGGTTCCAGTGTGTCCAACCAGTTAACACATTCCAAATTTAGCGCCAAAAAAAAAGTGCAAATTTTATCATGTACACTGGAACAAAAACAGAGAATTGTGGCTTCAGGCGATCTTACTCCCCTAATCCAAACTTGTATATCGGTAATTAGTGGTACTTAATGCACCTACTTTAGATGCATATGATATATAAGTTGGTTGATTAAGTACTTGTAAAGGATGGAGAAAAGTGAGTAATCTTGTGAAGTGTATCAAACTGTTTGGTTAAATTACAGAGGGTGATATTATTCTA

Functional annotation

Database	accession number	e-value	annotation
nr	OAY67011.1	3.8e-161	DELLA protein GAI1
Swissprot	A0A0M4FMK2.1	1.8e-152	Protein REQUIRED FOR ARBUSCULAR MYCORRHIZATION 1
trEMBL	A0A199UQS3	2.7e-161	DELLA protein GAI1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G66350.1	46.22	3e-89	326	RGL;RGL1	RGA-like 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G07288	AT1G66350.1	370	185	7	277	640	146	507	46.22	3e-89	326
AfisC2G07288	AT1G14920.1	376	184	9	277	639	163	529	45.21	7e-86	315
AfisC2G07288	AT3G03450.1	379	187	9	277	639	174	545	44.59	5e-84	308

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	283	639	429.6	8.7e-129

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006808	P	regulation of nitrogen utilization
GO:0009723	P	response to ethylene
GO:0009737	P	response to abscisic acid
GO:0009863	P	salicylic acid mediated signaling pathway
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0009938	P	negative regulation of gibberellic acid mediated signaling pathway
GO:0010187	P	negative regulation of seed germination
GO:0010218	P	response to far red light
GO:0010233	P	phloem transport
GO:0044212	F	transcription regulatory region DNA binding
GO:0033206	P	meiotic cytokinesis
GO:0042176	P	regulation of protein catabolic process
GO:0042538	P	hyperosmotic salinity response
GO:0043565	F	sequence-specific DNA binding
GO:2000377	P	regulation of reactive oxygen species metabolic process
GO:2000033	P	regulation of seed dormancy process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14494	DELLA; DELLA protein	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network