Detail information of AfisC2G07493


Location
GeneChrStartEndStrand
AfisC2G07493chr212104437721210447883+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrPKA59158.11.3e-131Homeobox protein knotted-1-like 3
SwissprotO04136.16.4e-128KNAP3
trEMBLA0A835VMH92.0e-134Homeobox protein knotted-1-like 3

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT5G25220.183.872e-136 481KNAT3KNOTTED1-like homeobox gene 3

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag109917.t1; g6046.t1
Allium fistulosumAfisC2G07493
Allium sativumAsa4G03695.1; Asa6G00294.1
Arabidopsis thalianaAT5G11060.1
Oryza sativaLOC_Os02g08544.1; LOC_Os02g08544.2; LOC_Os06g43860.1; LOC_Os06g43860.2; LOC_Os08g19650.1; LOC_Os08g19650.2

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF03790.10KNOX1Family7111263.31.2e-17
PF03791.10KNOX2Family13418269.51.3e-19
PF03789.10ELKDomain24026127.81.7e-06
PF05920.8Homeobox_KNFamily28031963.69.9e-18

Gene Ontology
AccessionOntologyName
GO:0005515Fprotein binding
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005829Ccytosol
GO:0005634Cnucleus
GO:0009416Presponse to light stimulus
GO:0009722Pdetection of cytokinin stimulus
GO:0010089Pxylem development
GO:0010192Pmucilage biosynthetic process
GO:0045892Pnegative regulation of transcription, DNA-templated
GO:0071345Pcellular response to cytokine stimulus
GO:2000652Pregulation of secondary cell wall biogenesis

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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