result

Gene information

Detail information of AfisC2G07571

Location

Gene	Chr	Start	End	Strand
AfisC2G07571	chr2	1225090546	1225094078	+

Sequences

CDS

Protein

Gene

>AfisC2G07571
TTCAAGAAACCCAAAACTTTGTTTTTTTACTTTATCTTCCACTTCAGTCCAATCTTACTCATCAATCCGGTTCTCCTCCTTCTCTTTGCCCGGATCTTGTGGATTTATTTGGTTCATTTGTTTGTTCATGTTGCTATCGGTCGTGACTTGTGAGACCTATATAATTTGCTTTCTAGTTTAGCCTCTTAAATGGGATATGATGGTTAAAGTGGAGACCGCCGTCGATCAGAGGTAAGCTGCGAATTTGTTATCAAGTTCTTTTGATGAATGAGTACACACACATTTGTTTGGATCGTAACTGTTATTTGTTTGAATATGGGATTTTGAATGCAAGTAACGTCAAATAAATGTTTCAAGAGTTTCTCAACTTCCTAATTTTGTCGATTTTTCTACAATGGTTGAAATAGAAATAGAAATATGGAATACTAACCATGTCCTTCAGGTGTTTGTATTTTTAACAATTTACTCTTAACAATAAATGATTGACATGTTATAGATGAGAGGTTTGAGACCTTAGTTGAGCAAACATTTGTACAACTGATGTTTGTTCTTACCTATCTAACTGAGATATCTTCATTAGCTGCGCACATTGCACATCTCATAATCATACTTTATGATCCTCTAATGACTGCACCCAGATTTTATTTTTAGGAGAAAAAACCATGTGCACTGCCTACTTTAATGAATGAGGGTGTTGTATCTGTGCATGGAGATATTGTTAAAATGTTCAGATGTAAACTGTTAAAGCCGATGAGTAGTAAACTTACTGCTAGATATAGAAGCCAAAGGTTTTGCAACAATGGCTATTACCCCTTCAAGAAATGCTATTTGTGTGGTAAAATGAAATTTTAGCCACATTATTTGTACTGTGCATGATGTAATTTAGCTATAACACATATGGTGTATTGAGAAAATAAGCAGTTGTGTTGGGAAATTCAGTTGGAAGTTTATATAATGAAAATTCAATATTTCCTAACTCCTTGATTTTATTGAACTTAATTCAACGTGCATTATTGGAGTTTGTAAGAACTTGTTTCCAATAAAATCAATTGCTAATCAAACGAACTTTTTAGTACTCAAAAAGGAAATTTAAAATACAATAAAGTCGTCATCGTCGGTGCATCATGAACGTTAACAATGTGATAGTTGAGGTCCATCAGGGTTAATTTTAGTGCAGGAAGTATTCTTCACATTTTGATCTGCCTACAAAGAAATTCAATTGCTGCATTTTAGCCAATAGAACAGCAACCAGGAGCTGGCAAAACTGTTTTTTCGTATATCACTGCATTCTTGCTGTATATTATTAATAAAAGAATCGATTCGGTTGTAATTTTTGCTATTTTTAGAAGTACAGAAATACAAAGGTAATTCAACCAACGGCCAGTAACGACCGCAAACCTGTTGCCTTATTGTCGTACTTCATACCTATAGAGTATTAATATGCAGAGAAGACAAAATCCAAATGTTTGCCTGAACCTCAATTGCATTTGTGGTTTATTAATATATTTGTGAAGAAACAGAGAGAACGAAAAACAAAACAAAAAAGGTTCTTCTCTAGGTAAAGATATGGAATGCTCTTACGAGTCTTCCCCTTCCCCTCCGCTATTTCCAAGAACTCACGTATATGAACCAAATACTAAAAGATCCAAAGACTGCTGCTGTTGTTCGAGACACAATGACCATTTATTGGACAGATTATTTGCTGAAGGTTACCTAGCTGATGTACATGTTTACACCAATAATGGTATCATTCCTGCACATTCTAACATTCTGGTTAGTATCTACTTTATATTCATCTTATTGCTGTTTATAATATCTATGTTGAATCATGAGAAAGAGTATTATTAATAGGGAATGACATCACCAGTGATGAAACAAATGCTAAGAAAACCAAAGCAGCGAGGAAGTCGATGGAGGTCAATATCGATACGAGGTGTTCCTGATCATGCTGTTCTCATCTTCCTTCGATTTTTGTATTCCTCGCGGTAAAATTTTCTCCCCAGAACATGATATTTATGGTTTTTTTTAGACCACTTCTGAAAACATATTTCATGTTTGAACCAATTTGAAAACTAATTACGAAAATATAATTTCTACCTACAAGGCAAAAACTGCTATATAATTTTGAATCGTTGCCACGGAGACAGAAAGTAATTGTTTTTGTGAATAGTTTCTGGTTTAAATGTGTATTTTGTTTTGAAAAATGGCTTAAACAGGTTTTAATGAAAGCCCAAAATTTTATTTTCATTTCACCAAAAGTAAATCATCAAATGAAAATATGCAGTTTTGAGGAAGAAGAGATGAACGAATACGCTTTACACTTAATGGTGCTATCGCATGTGTTTGCGGTTCCGACATTGAAGAAGATTTGTGCAGAAAAACTAGAGAGGTCGCTGCTCACAACTGAAAATGTGATAGATGTGCTGCAGCTTGCTGAGTTATGCGATGCTCCTCGGCTATATCTTTTGTGCCACCGCCTGATCATGGATAATTTTAAGGCAGTTTCTGAAACCGAAGGATGGAGAATAATGAGAGAAAGCAACCCCGATTTGGAGAAGGCACTTCTTGAGGCTGTCATAGAAATTGATGTAGTAAGTTATTTTTAAAACAGTAGAACTTGTATCATCATGTTAGAAAAATAATCATATAAGCTACCTTTACCCCAAAGGACAGCTTACTTAGCCAATATGTCGAGATGTCTGCTGAAAAGTGCAAAAGATTCAAAATCCATTTGAATAATTGAAGTACATGCATATTTTTTCCATAAGGCTTTGAGCATCAAGTTCTATTTTTGAGGTAGTTGTAAGAAAAGTTCCCATACCAATGAAATCCATATTCTTTTTAAGAAATTACAAGCAATCCTGCGCTTTTTGGATGTTTTTTGAAAAGTTTTTTCAAAAATCATAAAACCGATTTCCGCCATTTCTAAATAAGTATAATTTTTATCTAAGTATGTTTTTGTCAAATAACCTCACTTTTCTTTACTTTACCAAAATTTAATGGAATTTAAAGAAAACTTACAAAAAAACACAAGTTAGCTTGTGCTATCTGTTTCTGGAAAGTAGGAGCATGATTTATATATTCATTGTTACATAATTTTTTCTTCCAACAACATTAAAAACGGGGATCTGTAATTTTTTCAAACGTTTAAGAACAATGTCCAATTTACTTGGGTATTAATTTTTTTTAATCGTCTGGTATTATGATGCATTGCAGAAAAGGAAAGAAAGGAGGAAGAAAATGGAAGAGAGGAAGATATATGTACAGCTGCATGAGGCAATGGAAGCATTGGTTCACATATGCAGGGAGGGCTGCAGGAAGATTGGACCTAAAGATAGGAAGCTGAGGAGAAACAGCATGGGTCCATGTCGGTTTCCAGCATGCAGAGGGCTAGAGTCGCTTGTGAGGCACTTTGCTGTGTGTGAGAAACGGGTTGTTGGTGGCTGCAGGCATTGCAAGAGAATGTGGCAACTGCTTGAGCTCCATTCCAGGCTTTGTGACCAAAGTCAAACATGCAAAGTTCCACTTTGCAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010938954.1	8.9e-98	BTB/POZ and TAZ domain-containing protein 4
Swissprot	Q9FJX5.1	6.8e-79	BTB and TAZ domain protein 4
trEMBL	A0A835VBQ2	4.4e-99	BTB/POZ and TAZ domain-containing protein 4-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G67480.1	57.60	7e-82	300	ATBT4;BT4	BTB and TAZ domain protein 4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G07571	AT5G67480.2	250	104	2	2	251	93	340	57.60	6e-82	300
AfisC2G07571	AT5G67480.1	250	104	2	2	251	82	329	57.60	7e-82	300
AfisC2G07571	AT4G37610.1	252	108	3	1	251	76	323	55.16	2e-76	282

Ortholog group

Species	Genes
Allium cepa	g180727.t1
Allium fistulosum	AfisC2G07571
Allium sativum	Asa4G06214.1
Arabidopsis thaliana	AT1G05690.1; AT5G67480.1; AT5G67480.2
Oryza sativa	LOC_Os01g66890.1; LOC_Os01g66890.2; LOC_Os01g66890.3

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00651.28	BTB	Domain	2	80	29.6	5.6e-07
PF02135.13	zf-TAZ	Family	165	251	51.8	7.7e-14

Gene Ontology

Accession	Ontology	Name
GO:0042787	P	protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0005576	C	extracellular region
GO:0005516	F	calmodulin binding
GO:0005634	C	nucleus
GO:0005774	C	vacuolar membrane
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007623	P	circadian rhythm
GO:0009409	P	response to cold
GO:0009553	P	embryo sac development
GO:0009555	P	pollen development
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009734	P	auxin-activated signaling pathway
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0019005	C	SCF ubiquitin ligase complex
GO:0010167	P	response to nitrate
GO:0010182	P	sugar mediated signaling pathway
GO:0010200	P	response to chitin
GO:0030162	P	regulation of proteolysis
GO:0031625	F	ubiquitin protein ligase binding
GO:0042542	P	response to hydrogen peroxide
GO:0043161	P	proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0051973	P	positive regulation of telomerase activity

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network