Detail information of AfisC2G07816


Location
GeneChrStartEndStrand
AfisC2G07816chr212748903071274924363-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_008799528.12.7e-222homeobox-leucine zipper protein ROC5
SwissprotQ6EPF0.13.3e-201Protein RICE OUTERMOST CELL-SPECIFIC 5
trEMBLA0A8B8ZUX41.9e-222homeobox-leucine zipper protein ROC5 isoform X2

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT3G61150.151.250.0 744HD-GL2-1;HDG1homeodomain GLABROUS 1

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag518154.t1
Allium fistulosumAfisC2G07816
Allium sativumAsa6G05712.1
Arabidopsis thaliana
Oryza sativa

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00046.26HomeoboxDomain8413461.35e-17
PF01852.16STARTDomain273498146.56.1e-43

Gene Ontology
AccessionOntologyName
GO:0005515Fprotein binding
GO:0000976Ftranscription regulatory region sequence-specific DNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005634Cnucleus
GO:0006355Pregulation of transcription, DNA-templated
GO:0009828Pplant-type cell wall loosening
GO:0009845Pseed germination
GO:0009913Pepidermal cell differentiation
GO:0010091Ptrichome branching
GO:0042335Pcuticle development
GO:0043481Panthocyanin accumulation in tissues in response to UV light
GO:0048497Pmaintenance of floral organ identity
GO:0048765Proot hair cell differentiation
GO:0048825Pcotyledon development

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K09338HD-ZIP; homeobox-leucine zipper proteinEC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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