result

Gene information

Detail information of AfisC2G07827

Location

Gene	Chr	Start	End	Strand
AfisC2G07827	chr2	1276142408	1276146237	+

Sequences

CDS

Protein

Gene

>AfisC2G07827
ATGATGAATTCTGGAGACAATGGAGATTCTGATGGAAAAAACAACAATAATAAAAGAATCATTAACAACCATAACAGCGTAGGAGAATCAGAAAGTGAAAGTAGGCCAAGAAGTGATAAACCTCCATTTTCTGGTGATTCAATGGATCTTTATCAAGATAATTCAGCAGATAGAAGTAAAAAATATCATCGGCACACACCTCAGCAAATTTATGAACTTGAAAAGTAAGCGCCATCTTCCAATTAATGCTTCTTTTGAATGATCGATCATATCATTTTATTAATTTTAATGTGATTTTTGTTAATATAGGGTGTTTAAGGAGTGCCCTCATCCTGATGAGAAGCAAAGGCTACAGTTGAGTCGTCGCCTTAAACTTGACACCCGCCAGGTTAAGTTCTGGTTTCAGAACCGTCGTACTCATACGAAGGTCTACTTTTTATTCTTGCATCTAGTTAATTTATTTCAAGCCAACCATTATTCTATATATTAAATAAAATGATAAAAAAAATTGTTGTATATCTATACAGACACTGATAGAACGACAAGAACACTCTATCCTGGAGGAGGAAAACCAAAAGTTAAGGCAAGAAAACTTAACGGCCAAAGAAGCAATGAGAAATCCAGCATGCAGAAACTGTGGTGGACCGGCCATGTTAGGAGAAGTAAAGCCTAAACAACAACAACTGGTGATTGAAAACGTTCGTTTAAAGGCCGAGCTGCAACGAATATGTACCCTAGCTGGGAAGTTCCTGGGGCGCCCTTTATCAAACATGACCTCCTCATTCAACTCAGGGGGTGTACTTAGCAATGGCTTTGTTAACCAAATGGCTGACCTAGGAAATAACCAGCTAGTGGTAGCTTCTAGCAATGACAATGGCAATGTGGGTGTAGATGAGAGTGGTCAGAGATCGAAGTTGTTTGAACTTGCATCAGCAGCTATGGATGAGTTGATGAAAATGGGTCTAATAGAAGAGCCTTTGTGGATGAAAGATGGTGAGAATGGGAGGGAAATGTTGAATTTTGATGAGTATGGGAGGATGTTTCAAAGGCACATAGGAGCAAAACCGGAGGGATATGTAAAGGAGGCAAGTAGGGCATCTGGAGTTGTGGTTGCTAATAGTACAATCCTTGTTGAAATGCTCATGGATGATGTATGAACTCTATTAGAATTTTAGCACCGATATCTGAGTTATAATACACGTATAGTCTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAAACCTTAATATGTATAGGATGATCTACAATGTTAGACATACTTTAGTGTCTGTACTGAAAATTTTGAACTGAATTACTCATGAATAAATGATGATACAGAAAGGCTGGGCGGATATGTTCCCAAGTTTGATTGCCAGCACCACCACCACTGATGTCATATATGGCAGCGTGGGTGGAACTAGAGACGGTGTGCTTCAACTCGTAAGCATTATAAACTTTGATTCATTTTGAAATTTATTTTAACCTATTTCATGAGATACTCAACTGTTATTTTTGACATAACTGAATTATGTATAACAGATGGAAGCAAGTTTCCAAGTTTTGTCACCATTTGTTCCAACCCGGGAAGTCAAATTTCTTCGCTTTTGCAAGCATCATTCTGATGGATTGTGGGGTATCGTTGATGTTTCTATTAATGGAATTCATGAATTTGCTACTGCAACAAATGGGAATGTGAGCTGCTGTAGATTTCCTTCAGGCTGCATTGTGCAGGATATGCCTAATGGCTACTCTAAGGTAATTTACATTCTCAACTTATAATCACACTTTGTTGAATGTTATCTAAAGTTAAGTAATAGATGTACTACTTTTAATGTCCTTATTGGTTGTATTAAGTTAAAATGCATGCTCTGATGATTTTTCTGATGCTGGATTGTAGACTTTGATTTTAATAACAAATTGTAAAAGAATTGGCTGGTTTTTCTTTGGAATTAGGATTGTTATTACATTAGATGATCATGACTTAATTTCTTATTTCATCACATTCTATACCTTAGCATTCTGTCTTCTGAGAAAGCACAGTAATGCATTTGTGATTTGGTTTGGACAAATCTGTGACAATAAATATATTATTCTGCAATGTGTGAAATAAATAACTATAGTGGGGACATTTGAATTTGTTCAAAGTTAAGATTTTTGTTCTACAAGGTTCTATATATGATTAACAAACCATGTCAATTTCTATAATGCTGGAGCCTCCAAATAAGTTAAAACATGCATAACTGTAAAGTGAATAAATACAGGTAACATGGGTGGAACATGCAGAATACGAAGAAAGCACGGTGCACAATCTGTATCGCTCTCTTCTCAAATCAGGCTTAGGCTTCGGTGCACAACGCTGGCTGGCCAATCTCCAACGACAATGTGAATGTCTTGCATTTCTCTTTCCTTCTCCTTCCACCCCTCGTAATTATAATCAGTCCGGTCAGTCAGGTCAGTCATCTCTCTATACTCTATAGTTTAATATTTAATACAAACTGCATCATATATTTATAAATACAAACTATATCATATATTTTGCAGGGATGACAACAATTGGAAGGAGGAGCCTGCTAAAACTAGCTCAAAGAATGACAAAGAACTTCTGTGCCAGTATCTCTGCACTATCATCATCATCATCATCAGTGCACAAATGGAGCAAAGTTGTCTCAGACGACATCATCAATGAAAACATCCGGGTCATATTTCGTCAGAGCATGAACGATCCCGGCGAGCCAAATGGCGTTGTGCTGAATGCAGCAACTTCAGTTTCCCTACCATTGTGCCCTACGAGGATCTTCGACTTTCTAAAAGACGTGAGTAGGAGAAGCATGTGGGACATTCTGGCTAATGGCAGGCCCATGCAGGAGATGACTCCCATTATCAAAGGGCACAATCCTGGCAATGCTGTCTCCCTCCTCCGATCTGATGTAAACTACTCTACTCTTCACTCTTACCTTCTATAGTTTACTTGTGTATATATTAACTAATCCTGTTGTGTTTATACTTTATAAAACTGTAATGTGTTTTAGATGGGAAATGTGAATGGGAATGAAAGCAGCATGCTAATACTTCAGGAAACATGCACTGATGTGTCTGGTTCGCTGATGGTGTACGCCCCTGTTGACATCCCAGCCATGCATCTCGTGATGAACGGTGGAGATTCTTCAGGCGTGGTGGTTTTGCCTTCTGGTTTCGTCGTTGCACCTGATGGTGATAATTCAAAGCCTGGTTCACTGCTAACTGTGGCTCTCCAGATTCTGGTCAACTCTGATACCAATGCAAAACTCAGTGTGCAATCGGTGCAAACTATTAACAACCTCGTTGCCAATGCTATCCAGAGTATAAAAGTCGGACTTAACTTGGAGGATTGATGGAGTGTGTTGCATCTTCAATACTTTTGGAATGCAGCACATATATCCGAAGAATCTGATTATATCAGTACTGGAAAATACAATAAATTTTCAACTTCATATAGCATAAGTTAGGCACAATTGTCAGTCGTTTCAATTTTTTTAATTTGTATTGAAGGAACTGCAGATTTTAGCCGAGTCCATTTGGTAAGTTTTGCTAGTTTTATCTTTATTCTATGGACAATAGCTACATTTGTTTATCCAAGGCTTAAATATAATATGTTCCTTAACCATGTAACAAACTTAAATAGTAGCTTGTAACAACAAAGTGGTTTCGGGTTGCAGAATAGTGAATGCTGTCTGGTATATATTTTGGTAATTAGGCTGCGGGTCAACCGGCTCTCCCGTTATAGCTATTGATTAAATACTGCAGTTGAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008799528.1	1.0e-218	homeobox-leucine zipper protein ROC5
Swissprot	Q6EPF0.1	2.9e-194	Protein RICE OUTERMOST CELL-SPECIFIC 5
trEMBL	A0A8B8ZUX4	7.3e-219	homeobox-leucine zipper protein ROC5 isoform X2

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G61150.1	50.73	0.0	733	HD-GL2-1;HDG1	homeodomain GLABROUS 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G07827	AT4G00730.1	725	282	15	29	732	106	801	54.21	0.0	733
AfisC2G07827	AT3G61150.1	753	310	14	21	732	74	806	50.73	0.0	733
AfisC2G07827	AT4G04890.1	702	329	11	57	732	61	738	46.01	5e-175	611

Ortholog group

Species	Genes
Allium cepa	g237086.t1
Allium fistulosum	AfisC2G07827
Allium sativum	Asa3G02921.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	60	114	64.4	5.4e-18
PF01852.16	START	Domain	247	471	148.2	1.8e-43

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006351	P	transcription, DNA-templated
GO:0009828	P	plant-type cell wall loosening
GO:0009845	P	seed germination
GO:0009913	P	epidermal cell differentiation
GO:0010091	P	trichome branching
GO:0042335	P	cuticle development
GO:0043481	P	anthocyanin accumulation in tissues in response to UV light
GO:0048497	P	maintenance of floral organ identity
GO:0048765	P	root hair cell differentiation
GO:0048825	P	cotyledon development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network