result

Gene information

Detail information of AfisC2G07833

Location

Gene	Chr	Start	End	Strand
AfisC2G07833	chr2	1276304839	1276306120	-

Sequences

CDS

>AfisC2G07833
ATGCAAAGAATAGCATCATACTACACCGAATCGCTGGCTTTACGATCGATAAAACACTTCCCGAACACCTTCACGATATCTCCACCAAGGGACATAATCGATCAAATCGAAGACGATGATGGCATTGCTCTCCGTCTGCTGAACCAAACAAGCCCAATCCCAAAATTTCTCCATTTCACACTGAACGATAAGCTTCTAAAAGAGGTAGAAGGAAAGGATAGACTGCACATCATAGATTTCGACATCAAGGAAGGTCTACAGTGGCCGAGTTTGCTTCAGAGCTTGGCTTCAAGGCCCGATCCTCCAACCCAAATTCGAATAACGGGAATCGGCGATTCGAGGCATGTTCTTCAAGACACCGGAGCTAGGCTTAAGAAATTGGCCGATTCTTTGAATCTTGAATTCCAGTTCCATGCCGTTGTCGATAGGTTAGAAGATGTGAGGCTTTGGATGCTTCACGTGAAGGAAGGCGATTATGTAGCGGTGAATTGTGTGTCACAACTACATAAGGTGTTGTATGATGAGACTAGGGTTGCATTGGCGAATTTTTTTGGGCTAATACGGAGCGTGAAGCCATCGTTGCTTCTTGTAGCGGAAGAAGAAGTCGAGAATAATGATTCGAGGTGGGAGATGAGGTTTGCAAGTTCGTTGAAGTACTATACAACTTTGTTTGATTCGATAAGTTATGGTTTTATGCATGAAGATTGTTTGGCTAGGTCGAAGATTGAAGAAATGTTTGGCAGAAAGATAAGGAATGTTATTTGTTGGGAAGGGAAAGAGAGGCATGAGAGACATGAGAAGTTTGAAAGATGGAAGGAGAAATTAGAGGATCGTGGGTTTAGATGTTTGAAGTTTGGAGAGAAAGATGCGATGCAAAGCAAATTGATATTGAGGATGTATTCGAATTATGAGAACTATAGAGTTGAAAGTAGAGGAGGACGTGATGGGCTTACTCTCAAATGGCGTGATCAAGATTTATACACTGTTTCGGTTTGGGCACCCTTTTAA

Protein

Gene

>AfisC2G07833
ATTTAGGGTTCAGGGCTATAGCTTCATTTACTGTAGACACCGCCAGTTAAGCTGAAGTTGTATTCCCTTCCATCTGTCTTCATATACCAAGAAACACATACACAACCTAACAGTACTCAAACGGAGAATCAAGACATAGAGCTGGTGAGCTTGCTCACATCCTGTGCTGAATCGATAACCTCGTCAAACCAAGCAGCCATAAACTACTTCATTTCAAGACTAGGAGAGCTTGCTTCTCCTAGAGGTACAACTACAATGCAAAGAATAGCATCATACTACACCGAATCGCTGGCTTTACGATCGATAAAACACTTCCCGAACACCTTCACGATATCTCCACCAAGGGACATAATCGATCAAATCGAAGACGATGATGGCATTGCTCTCCGTCTGCTGAACCAAACAAGCCCAATCCCAAAATTTCTCCATTTCACACTGAACGATAAGCTTCTAAAAGAGGTAGAAGGAAAGGATAGACTGCACATCATAGATTTCGACATCAAGGAAGGTCTACAGTGGCCGAGTTTGCTTCAGAGCTTGGCTTCAAGGCCCGATCCTCCAACCCAAATTCGAATAACGGGAATCGGCGATTCGAGGCATGTTCTTCAAGACACCGGAGCTAGGCTTAAGAAATTGGCCGATTCTTTGAATCTTGAATTCCAGTTCCATGCCGTTGTCGATAGGTTAGAAGATGTGAGGCTTTGGATGCTTCACGTGAAGGAAGGCGATTATGTAGCGGTGAATTGTGTGTCACAACTACATAAGGTGTTGTATGATGAGACTAGGGTTGCATTGGCGAATTTTTTTGGGCTAATACGGAGCGTGAAGCCATCGTTGCTTCTTGTAGCGGAAGAAGAAGTCGAGAATAATGATTCGAGGTGGGAGATGAGGTTTGCAAGTTCGTTGAAGTACTATACAACTTTGTTTGATTCGATAAGTTATGGTTTTATGCATGAAGATTGTTTGGCTAGGTCGAAGATTGAAGAAATGTTTGGCAGAAAGATAAGGAATGTTATTTGTTGGGAAGGGAAAGAGAGGCATGAGAGACATGAGAAGTTTGAAAGATGGAAGGAGAAATTAGAGGATCGTGGGTTTAGATGTTTGAAGTTTGGAGAGAAAGATGCGATGCAAAGCAAATTGATATTGAGGATGTATTCGAATTATGAGAACTATAGAGTTGAAAGTAGAGGAGGACGTGATGGGCTTACTCTCAAATGGCGTGATCAAGATTTATACACTGTTTCGGTTTGGGCACCCTTTTAATTTCTGATTTTTTTTGGAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020241359.1	4.5e-121	protein DWARF AND LOW-TILLERING-like
Swissprot	Q9CAN3.1	9.7e-97	GRAS family protein 8
trEMBL	A0A8B7CKB5	2.5e-113	protein DWARF AND LOW-TILLERING

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G63100.1	52.91	1e-103	373		GRAS family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G07833	AT1G63100.1	344	150	4	1	333	312	654	52.91	1e-103	373
AfisC2G07833	AT2G01570.1	340	198	9	1	332	258	580	34.41	2e-52	202
AfisC2G07833	AT1G14920.1	340	197	9	1	332	206	528	34.71	9e-52	200

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	1	332	344.7	5.5e-103

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009651	P	response to salt stress
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0010029	P	regulation of seed germination
GO:0043565	F	sequence-specific DNA binding
GO:0044702	P	single organism reproductive process
GO:0048519	P	negative regulation of biological process
GO:0048608	P	reproductive structure development
GO:0051301	P	cell division
GO:1902578	P	single-organism localization

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network