result

Gene information

Detail information of AfisC2G07840

Location

Gene	Chr	Start	End	Strand
AfisC2G07840	chr2	1277224923	1277226122	-

Sequences

CDS

Protein

Gene

>AfisC2G07840
TTATCCATCACCCTACTCTAAAATAGCTACTATAGAACCAAAAATATTATAAAATAATCAAATTAGAAGAAATTTGTAACCTATCAACAAGAATATCATACCATAAAGTAAGGCAGCACTTGACCAACTTGCTCGATGCGACAGGGCAAAAAACAATAAATTAACCACTGAATTCGATCACATGTCAATTGCATCTCCCTGAAGGTTCACAGAACTCAAAGGTTCCATTGAATAATGGAACAAAATCCATCACAATTCTCCACCAAAATTTTACCTCTATTTCTTTACGCACGTGAGCCCGGAAACTTCAGAGAAGGCGACAGCATCAAATTTTTATGCAAATTCAAACGTTCATGCATCTCCCGACCTATATATACACAAATTCCCTTCATAGTCCATACTCACTTCCGTACTCATACATAAAACCATAGAAGCAACCAACATGTACTTCGACCAACAAAATCTGAACCCATTCGATCACCTCCTTCTCGATTCGATAAGGCAGTACCTGCTGGAAGAGGACTCGGACAGCAGTTGCACAATGAGCAGCGATACACGGGCGCTGACGCCGGACTTGGAGTTGAAGTCGGAACCGGAAACGCCCAAATCGGAAGCGGTGGAGAAGGAGAGGCATTACAGGGGGGTGAGGAGGCGGCCGTGGGGGAAGTACGCGGCGGAGATAAGGGACCCGGGGAGGAACGGGGCGAGGGTGTGGCTGGGGACGTTCGAGGCGGCGGAGGACGCTGCACTGGCGTACGATCGGGCTGCGTACCGGATGCGCGGATCCCGGGCGATTTTGAACTTTCCGTTGAGGGTGAGCGAGCATGGGGAGATGAGCGAGGGTAAGAGGGCGGGTGGTGGAAATATTGGGGGCGGGGGTAAGAGGTTGAAGAGGGAGGCGGCGTGCAGTGGTGATGAAGCTGTTAAGGAGGAGGTTTGGTTTAACTGAATTGATTTGGGGGTTTAGGGATTTAGAATGTGTCGCTTGGATGCTTTGGTCGTTCGCTCCTTTGTACAGTTGGAATGTGAAAGCCTTTGTTTAGAATCGTCGTTTCAGTAATTATTATTATTTTATATCTTGATATGATATCTTCATTCGTTTTTTTACTACTTGATTGGGTTTTTTGGGTAGCTTGATGTTACTTGTGAATATGGAATTGTATTACTGATATAATATAATAATAATAATAATTTTATCAA

Functional annotation

Database	accession number	e-value	annotation
nr	AUY62741.1	1.0e-28	AP2/ERF transcription factor
Swissprot	O80337.2	8.2e-28	Ethylene-responsive element-binding factor 1A
trEMBL	A0A3Q8D532	7.2e-29	AP2/ERF transcription factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G47220.1	61.54	3e-31	131	ATERF-2;ATERF2;ERF2	ethylene responsive element binding factor 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G07840	AT5G47220.1	104	35	1	28	126	75	178	61.54	3e-31	131
AfisC2G07840	AT4G17500.1	94	29	1	35	126	116	209	67.02	3e-31	130
AfisC2G07840	AT5G51190.1	129	60	2	16	137	16	144	48.06	7e-29	123

Ortholog group

Species	Genes
Allium cepa	g34373.t1
Allium fistulosum	AfisC2G07840
Allium sativum	Asa5G03059.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	64	114	47.9	1.1e-12

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0001944	P	vasculature development
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0050832	P	defense response to fungus
GO:0005634	C	nucleus
GO:0009409	P	response to cold
GO:0009414	P	response to water deprivation
GO:0009835	P	fruit ripening
GO:0009864	P	induced systemic resistance, jasmonic acid mediated signaling pathway
GO:0009873	P	ethylene-activated signaling pathway
GO:0010200	P	response to chitin
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0019760	P	glucosinolate metabolic process
GO:0051301	P	cell division
GO:1904277	P	negative regulation of wax biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09286	EREBP; EREBP-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network