result

Gene information

Detail information of AfisC2G08009

Location

Gene	Chr	Start	End	Strand
AfisC2G08009	chr2	1311377437	1311378823	-

Sequences

CDS

Protein

Gene

>AfisC2G08009
TCTATCGCTTGCAAAGCTATTAAGTTGTCACCATTAAACTTATCTAATGCATACACAAATTTCCCTTCCATAAACCTAGTCATATCTTCACCAAAAGCAACCACAGCAACATGAAATTACAGTGCGACGCCTGCAACAAAACTGCAGCCTCGGTCATCTGCACTGCAGACGAGGCTGCACTGTGTGATGACTGCGACCGTAAAGTTCATCATGCTAACAAAGTTGCAAGCAAACATCTTCGTTTTTCACTCTCTGAATCGAGCGAACTTCATCTCTGTGATATATGCAAGGTTTCCTTCTTCTTTTTTTCCCTTCTACATCATATATTTTTACAGTACTTTTAAGCTAATGATGTGTAAATATTTGATTTTTGATCCAGGAAAAAGGAGGGTTCTTTATATTTTGCCAGGAGGACAGAGCCATACTGTGTTGGAACTGCGACGACTCAGTCCACTCTGCTAATAAGCTCACCATGAAACACAGCAGATTTTTACTGACTGGAACACAAATCTCAGCTGTTTCTTCATTAGAGAGTAGCTGTAGCAGTAATAATAAGCTGATGAAGTCAAGCCAAGATAAAAGTAATCAAATCAATGATGGTACAAGCAGTTTATCAGAGTATCTGATCAAAACTCTTCCTGGCTACTGTGTCGAAGATTTGCTAGATTTTACTGTACCATACAAGGTATATGTAACACCCTATATGATATATACATGTGTGTATTATCATCATCTTCTTTGTCTTTTTTTCAAAGGATTGGGATTGATCATGTAAATTCTCATTTCCCCATGGTATGTTTATGACAAAAGAACAGATCTGAATTATTATTTTGTGTGCATCTTATTCTTATCATATAAATCATCTATACATAATTTTGCATAATTTCAAAGCATCTCTATGTACTGCTGAAAAATTGTATGAAAAAAATGGACAACGAATCTTGAGGGACAAGTGAGATGTGAGAATATAAAGTTTGAACTTTGAACACCAGTGACTATATAATCCTAAGAGTTTATGATTTTTTTGGTCTTTCATTCTTCTGATTGCTAATGAAAGATATATACTTGAAGCAAAATTTTGATATTTGGACTCTCAAATGTACAGAAAGATGAGATTTGTCCAGAGCCAGAAGAAAGAACTGAAGTCCAATGTCCAGTCTGGGTACCTCATGTTCCACAAGTGCAGCTCTCAAACGACATGCACAACGATTTCAATACTTTGTTCAGTCATAACTACGTGGATCTGAAATATAATCAAAATGAAAATGAACTTATGGAAGATGCAAGTTTAGTACAAAGCCAAGGCGAATTGTCATGCATGGTGCCTCAGCTTAATACTCCTGTTTTGAAAAATAATAAGAGATGCAGGCCTTCTTCAGGATGGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_007160700.1	5.2e-45	hypothetical protein PHAVU_001G009700g
Swissprot	Q9LQZ7.1	1.0e-37	Protein SALT TOLERANCE HOMOLOG 2
trEMBL	V7CRG1	3.7e-45	B-box zinc finger protein 22

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G75540.1	37.76	5e-43	171	AtBBX21;BBX21;LHUS;STH2	salt tolerance homolog2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G08009	AT1G75540.1	331	122	13	1	250	1	328	37.76	5e-43	171
AfisC2G08009	AT4G39070.1	201	71	4	1	156	1	200	41.79	7e-32	134
AfisC2G08009	AT1G06040.2	182	95	5	1	178	1	177	42.86	2e-30	129

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
-	-	-	-	-	-	-

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003712	F	transcription cofactor activity
GO:0005634	C	nucleus
GO:0006351	P	transcription, DNA-templated
GO:0009651	P	response to salt stress
GO:0010200	P	response to chitin
GO:0043565	F	sequence-specific DNA binding
GO:0048573	P	photoperiodism, flowering
GO:0080167	P	response to karrikin
GO:0090351	P	seedling development
GO:1900458	P	negative regulation of brassinosteroid mediated signaling pathway
GO:1902448	P	positive regulation of shade avoidance
GO:2000306	P	positive regulation of photomorphogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network