result

Gene information

Detail information of AfisC2G08152

Location

Gene	Chr	Start	End	Strand
AfisC2G08152	chr2	1336924805	1336929204	-

Sequences

CDS

>AfisC2G08152
ATGGCTACTTACTTTCATGGAGCTCAAGAAAATATCCAGCCCGAAGCCGCTCAGACTTTGTACCTAATGAACCCTACCTACATCGACTACCCGGCGACCACTACCTCAACTCATCAAGCAAACAACATACAATTGTTCCTAAACTCCTCCATGAATAATTCTTCTCTAAACTCAATACAACAACAACAGCAACATCATCATTTTGTAGGGCTACCTATTCAACCTTCGCAATACACAACCCAAAGCCAAGACCTATCGGTTATGCATAGCTATAATAATGTCCCGATTGATGTAAATCAATCGCAGTTATGTGTTAGAGGACCTAGCAATAGCAATATTGTGTCGGTGGCGCAAAGAGGATTGTCTTTAAGTTTGTCTTCACAACAAGTACAAGGAGATCAAGAGATGAAGATCGTTGGTCAAAGCGTGTTGATGGGTTCAAAGTACTTGAAGATTGCACAGCAGTTGTTGGATGAGGTTGTTAATGTTGAAGCTATGACTGGTAAAGGGGTTAATGATTCCAAAAAAGAGGTTAAGCGTTGTAATCAAGAATTAGGTGAAGGAGATGCTAGTGGTAAGAAAAGTGATGACTTGTCAACTGCTGAGAGACAAGAGCTACAGATGAAGAAAGCTAAGCTTGTTAACATGCTTGATGAGGTTGAACAGAGATACAGGCAATACCACCACCAAATGCAAATAATAGTTTCCTCCTTTGAATCAGCAGCCGGATTTGGCTCTGCAAAAACATACACATCCCTTGCTCTCCAAACTATTTCAAAGCAATTTAGATGTCTAAGAGATGCAATTTCTAATCAAATTAGAGCAACGAGTAAAAGTTTGGGAGAAGAAGATTGCTTTGCTAATGGAGGCGGCAAATCAGTAGGATCCAGACTGAGATTTGTTGATCATCAATTAAGGCAGCAAAGAGCACTTCAGCAATTAGGCATGATTCAGAATAATGCTTGGAGACCACAAAGAGGATTGCCTGAGAGAGCTGTATCCGTGCTCCGGGCATGGTTGTTCGAGCATTTTCTACATCCATATCCAAAAGATTCAGATAAACACATGCTTGCAAAACAGACGGGACTCACCAGGAGCCAGGTGTCAAATTGGTTTATAAATGCAAGAGTTCGGCTATGGAAGCCAATGGTGGAAGAAATGTATCTAGAAGAAACCAAAGATCAAGAACAGAACAATGAAGGTGAAAACAAATCTACAAAAAGCGAAGAAATTAGCGATTCTCCGTCACAACAAGAAAACACCATTCCATCAAGAACAGAGCAAAATGATAACCTAAAGCCAATTCAAAACAATCAAATGGTCCAAACTTCTCAACATATCCAAGATATGTACAACGAATCATCATCAATCATGCAACAGAGAATGAAAAAGATACGTAGTGACGATTCTACCCAAATGATGAGTATGGGAATGAAACAATACGACATGAATAACCGTGACCTTCTAATGAAGTTCATGGATCAAGAGACGGGTTTTGAACAGTATCCAATTGGAGAAATTTCCCGGTTTGATCTTGAACAAATTGCACCAAGATTTGGAAGCAACGGAGTTTCACTCACTCTCGGACTGCCCCATGGTGAACCATCTTACATTACTAATGAAGGCATTAACCATTTGGAAAATAACAACCATTTTGTTGGATTGAACAATAATGGCAACAGTCCAAGTAGTTCGAATCCGAATAATGGGTATGAAAGTATTGATATTCAGAACAGGAAACAGTTTGCAGCACAGCTACTACCAGATTATGTAGCTTGA

Protein

Gene

>AfisC2G08152
GTGATATAGAAAGAAGTATATCGAAATATTCATATATAAGAATAGACTAACATATTACTTGATGTAGTCACAAATACTATTTTAATTCAATACACACAAAACAGTTGCTTTTTGTGTATTATTGTGACATGTTCTACAATCCTCTTTAGTCTGAGCTCCTTATTGAGAATTTCTAGAGAGGATCAAGATTTCAGTTCACAAATTAAAAATTTTAAAAGGTGAAACAAATTCTATTTCTTGCTTCTTTCATCATCCCACGTGCTTTCAGTTTCAGGTAGTACTTGAAATATATTTATATTTACTTATACATCATAAGCTTTTTGATGTATTCATATATAAAGATACATGCCTACTTCTTATCTTATGATGTTATTCAATATGATTATGAGAGATGTGATCTTTTGCATAATTTATCCTTGAAGCATCCTCTCATGTTTCCTCTCTCATAAATTAAAATTTAGATTTGTATATATTTTATTTGAAATCTATTGGGGTTTTTTACCAACAATTAAAATTATATGATTGTTTAATCAAATCAACTTTTTTTCCAAGAAAATAAAGGTAGTTAGCTTTACTCATGATTCCTCTTTCCAAATCATTTCATGATTATATATATACTTACCTTAGCATCTAAAAAAAATATCTTCATGGATATAGTTTGAATTTTCAGGAGTAATGGCTACTTACTTTCATGGAGCTCAAGAAAATATCCAGCCCGAAGCCGCTCAGACTTTGTACCTAATGAACCCTACCTACATCGACTACCCGGCGACCACTACCTCAACTCATCAAGCAAACAACATACAATTGTTCCTAAACTCCTCCATGAATAATTCTTCTCTAAACTCAATACAACAACAACAGCAACATCATCATTTTGTAGGGCTACCTATTCAACCTTCGCAATACACAACCCAAAGCCAAGACCTATCGGTTATGCATAGCTATAATAATGTCCCGATTGATGTAAATCAATCGCAGTTATGTGTTAGAGGACCTAGCAATAGCAATATTGTGTCGGTGGCGCAAAGAGGATTGTCTTTAAGTTTGTCTTCACAACAAGTACAAGGAGATCAAGAGATGAAGATCGTTGGTCAAAGCGTGTTGATGGGTTCAAAGTACTTGAAGATTGCACAGCAGTTGTTGGATGAGGTTGTTAATGTTGAAGCTATGACTGGTAAAGGGGTTAATGATTCCAAAAAAGAGGTTAAGCGTTGTAATCAAGAATTAGGTGAAGGAGATGCTAGTGGTAAGAAAAGTGATGACTTGTCAACTGCTGAGAGACAAGAGCTACAGATGAAGAAAGCTAAGCTTGTTAACATGCTTGATGAGGTAGTTTAATTTTTCTTCTTTGCTTAGTTACCTTTTTTCTTTTTTTTTCTTTTTAATTATGACCTCTATTTTGGTATAAGCAATTTTGATAGCAAAAAGATTGTGTTGCTACATGAAGAAATTTTCAGCTTTCAATTGTTGGCAAGTTTAATATTCTTTGCTAAAAGTTAACTGATTTTTCTCATAATTTTTACTGAGTTTTAATTGGTTTTGCTCATTTAAAATCTATCTGATTTTCTCTAGTTTTTTTTATTTGATTTTTATAGTTGGAATTGTCTATAAATGTATTTCAAAACAAGTTATATCTCAACCATATTCCAAATAAGAGATTGATGTTTTTAGATGACAAATAAAGATTATGCTTTGCTTGGTAGCCAAAGAAATTTTCGATTGATTCTGCTCATATTTTTCACTGAATTTTAACTGATTCCGTCCATTCAATTTCTAACTAATTTTCTCCATTATTTATTACTTTACTTTCTAGTTGGAACTTTCTTACATGGCAAGTTATATCTCAACCATATTCCATAAAGATGAAAAAAAATACGATCATGTAATTAAGAAACTGATGAATTCCTTTGGATGACAAATGGAAAGGAAAATTAAAAAATGAGTTCCTGAACTTTACATACTTCTAGTTTTCTTCGAATGGAATTTAACAGAGATAACAGAAAGAAAGAAAGGCTAATATACCCAAACTCCATGAATTATTTATTTGTTTATTTATTTTTACATGTATTGGCTTAAAATACTACAATTCCTAATTTATGATAAAATATAGTTATATTTGCTATCAAATCATGCTGCCTATCATAAATTACAAAAGGTTTCAAATCATGCTGCCTATTATAGATTACACTTTTGGATCAAGTACTTCTCATATATTAAGCAATCAAATATTTATTTTGTATTAAGTACTTCTTTACGTGAAACCAATGAATAAATCTTCTTTTGCTACATGAAGGTTGAACAGAGATACAGGCAATACCACCACCAAATGCAAATAATAGTTTCCTCCTTTGAATCAGCAGCCGGATTTGGCTCTGCAAAAACATACACATCCCTTGCTCTCCAAACTATTTCAAAGCAATTTAGATGTCTAAGAGATGCAATTTCTAATCAAATTAGAGCAACGAGTAAAAGTTTGGGAGAAGAAGATTGCTTTGCTAATGGAGGCGGCAAATCAGTAGGATCCAGACTGAGATTTGTTGATCATCAATTAAGGCAGCAAAGAGCACTTCAGCAATTAGGCATGATTCAGAATAATGCTTGGAGACCACAAAGAGGATTGCCTGAGAGAGCTGTATCCGTGCTCCGGGCATGGTTGTTCGAGCATTTTCTACATCCGTAAGTACTTGAACTACAATATGCATATACACGTACATATATGTACAACCCACACCCCCCCCCCGTGTGATTGCATACACAACCGTGTAAGTTATTTCATGATAGTAATTAGTCAGATGTCATATACAACCATGAATTCCACATATATTAATAATTTTGAGTATAAGATGTGTCATAAGAAAATACTACAAACTATGAGCAGCATTGCATATGTTTAGAAGGTTATGGGTAGCAGGTGTATCCAGTATCTGCAGTACTGGATATTTTCAGAAAATTAATGATTCAATAATGATATATAATATTGTTCATGAGCCCTGACAATAAAAGCTTGTCATAATTCTTAGTCAACAATAGATCGACATCATTTCTAGCATCTTATTGATTGCAAAAAGCGATGGTAATGAAAGAGAGACATGTGCTTTGAATTGTGTTACCAAAATGTTGCCCCAGATGTAAACTGGAATTCAATGGGGTACATGCATGATCTGACAACTACAAAGAAAAGTAACTCATAGTGTTATACAGATTGATTTCTATACTGCAAAACATACAAAAAAGATATTACAGAGATATATGCAATGCATTTCATGGTTAACAATTTGAGTATCACCTTCAATCATATTTATTTTTTGGGGGGTGCATGCAGATATCCAAAAGATTCAGATAAACACATGCTTGCAAAACAGACGGGACTCACCAGGAGCCAGGTATGTATTTCACCACATATTAAAACCAAATAATGGTTACAGAAAGAATGGACTTTTGACATTTTGGTACATACAAAGGTGTCAAATTGGTTTATAAATGCAAGAGTTCGGCTATGGAAGCCAATGGTGGAAGAAATGTATCTAGAAGAAACCAAAGATCAAGAACAGAACAATGAAGGTGAAAACAAATCTACAAAAAGCGAAGAAATTAGCGATTCTCCGTCACAACAAGAAAACACCATTCCATCAAGAACAGAGCAAAATGATAACCTAAAGCCAATTCAAAACAATCAAATGGTCCAAACTTCTCAACATATCCAAGATATGTACAACGAATCATCATCAATCATGCAACAGAGAATGAAAAAGATACGTAGTGACGATTCTACCCAAATGATGAGTATGGGAATGAAACAATACGACATGAATAACCGTGACCTTCTAATGAAGTTCATGGATCAAGAGACGGGTTTTGAACAGTATCCAATTGGAGAAATTTCCCGGTTTGATCTTGAACAAATTGCACCAAGATTTGGAAGCAACGGAGTTTCACTCACTCTCGGACTGCCCCATGGTGAACCATCTTACATTACTAATGAAGGCATTAACCATTTGGAAAATAACAACCATTTTGTTGGATTGAACAATAATGGCAACAGTCCAAGTAGTTCGAATCCGAATAATGGGTATGAAAGTATTGATATTCAGAACAGGAAACAGTTTGCAGCACAGCTACTACCAGATTATGTAGCTTGATTTTTATCTATATTTAACATAGATTTAATAGATTTGGGTGTATTACTATTAGGATGTTTGTAAATTATTAGAAAGGGTGAGGGGCATACTTTATAGAAGATAGATTTCAGGTCACAGAATTATACTTGATATATATAATCATTTGTGCGCTTCAACATTTATAAATGCAGAGGATGTATTTAATAGGGTTATGTAATTTCATACGATATACTCTGATGTTACATCAAGCATGTTCACACCAGATGATGAGTAAATTCT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020686609.1	1.6e-137	BEL1-like homeodomain protein 1
Swissprot	Q9SJ56.1	1.1e-103	Protein EMBRYO SAC DEVELOPMENT ARREST 29
trEMBL	A0A2I0W3Q7	1.1e-137	BEL1-like homeodomain protein 1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G35940.1	43.00	3e-112	402	BLH1;EDA29	BEL1-like homeodomain 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G08152	AT2G35940.3	714	251	25	1	592	1	680	43.00	3e-112	402
AfisC2G08152	AT2G35940.2	714	251	25	1	592	1	680	43.00	3e-112	402
AfisC2G08152	AT2G35940.1	714	251	25	1	592	1	680	43.00	3e-112	402

Ortholog group

Species	Genes
Allium cepa	g483625.t1
Allium fistulosum	AfisC2G08152
Allium sativum	Asa6G01110.1
Arabidopsis thaliana	AT2G35940.1; AT2G35940.2; AT2G35940.3
Oryza sativa	LOC_Os11g06020.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07526.8	POX	Domain	143	270	165.1	1.2e-48
PF05920.8	Homeobox_KN	Family	339	378	65.6	2.4e-18

Gene Ontology

Accession	Ontology	Name
GO:0000790	C	nuclear chromatin
GO:0000978	F	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001103	F	RNA polymerase II repressing transcription factor binding
GO:0001133	F	RNA polymerase II transcription factor activity, sequence-specific transcription regulatory region DNA binding
GO:0003682	F	chromatin binding
GO:0051015	F	actin filament binding
GO:0003785	F	actin monomer binding
GO:0005829	C	cytosol
GO:0046983	F	protein dimerization activity
GO:0008285	P	negative regulation of cell proliferation
GO:0009640	P	photomorphogenesis
GO:0010051	P	xylem and phloem pattern formation
GO:0010076	P	maintenance of floral meristem identity
GO:0010077	P	maintenance of inflorescence meristem identity
GO:0010089	P	xylem development
GO:0010154	P	fruit development
GO:0010223	P	secondary shoot formation
GO:0010227	P	floral organ abscission
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0010229	P	inflorescence development
GO:0010371	P	regulation of gibberellin biosynthetic process
GO:0015629	C	actin cytoskeleton
GO:0015630	C	microtubule cytoskeleton
GO:0035955	P	negative regulation of dipeptide transport by negative regulation of transcription from RNA polymerase II promoter
GO:0048457	P	floral whorl morphogenesis
GO:0048510	P	regulation of timing of transition from vegetative to reproductive phase
GO:0080006	P	internode patterning
GO:0090470	P	shoot organ boundary specification

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network