result

Gene information

Detail information of AfisC2G08172

Location

Gene	Chr	Start	End	Strand
AfisC2G08172	chr2	1341355105	1341359868	-

Sequences

CDS

Protein

Gene

>AfisC2G08172
GCAAGTCCTCTGACTCTATCCAATAATGGATCCCAACCCGAACAGATCGGGTCACCGCCGCCACCACTCCGAGACGCTCTTCCGCCTCCCCTCTTTCACTGATGACCTGCTTGATTTCTCCGACCTCGACTTTTCTGACGATATCCCTGTAGGTAACAATAATTATGACAATAAAATCACCGGTAGTAGCAACCATCATCAGCAAACTCCGATTCCGGCACACGGAAGAAGTCTTTCCGTTGACGCGGCTTTCTTCGACGAACTAAACGAGCACAACAGCGATAGTAAGCACTTGAGAAGTGGACAGACTTCGCCTTCTAATTCGATTTCGTCTGATTATACAAAGAAAGCTATGGAGGCGGATAAGCTCGCTGAGCTGGCGCTGCTGGATCCCAAAAGAGCTAAAAGGTGATTTCTTATATATTCTTTTGGACTGTCTTTTTGTTGTTTAGTGGATTGTAGAGCAAGCTTGAGTTTAATGGTTATGCTAGTAAAGCTGTTAATAGAATAAGAAACTTGTATCAATTATCGGTAAGGAGTTAAAAGTCGCAGTGTTGTTGGGCATTTGTTCCCCTTTTGGTAAACTTTGGAGAGTTCATGGTGTTTATATCAATTATAGGATCTATGGAAAAAGATCCAGTTTATTAGTGAATTTCAGGGCAAAACATCTTATTTTTCTGCATCGAGTAAAAAGTGACATTCATATATTAGTTTGTTTATGTTTGGTTAATAATTTGTTAATGGTGATTGTAGGATACTTGCGAATAGGCAGTCTGCAGCAAGGTCCAAAGAGAGAAAGATAAAATATACTAGTGAACTTGAGAAGAAAGTTCAGACTTTGCAAATTGAAGCTACTACTTTGTCGACACAGGTTACTCTCTTGCAGGTTAGGACTACAAGTTACCTTTTCTTTACATGTATTTATAAATTAATGACTTAGATTGAGTTTGCTGTTTTGAATGATTTATATGCTTTTTATTTGTAAACTAGCAGTCATTTATGATGTTATTAGCTAATAATTCATTGCGCACAAGAGGTTGATAGAACTTGAACAAGCAAAGATAGTCAAGGTTTGGTATATTTGTTTTAGTTTAGATCGCTCAAGGGGTCACCTTATAAATGAGTTAAGCTCAACAAAACGAATTAAAATATTACTGGTATATTAACAAGGCTTAGTTTTTCTCTTCGACATTTATGTTATCAAAATTAATTTGGTTGTACTTTGATTTAACTGGTTGTGAGTGTCAAGTATATGGATTGTGAAAAGAAAATGCTAGTTATCCATATTTTTTCTAAAATTTTTGTAGATGAGTGGACTCGTACGAGTCACAATTGTTATTGTCTGTTCAGGTTTAGCTTGTTATGTTTTATGTATGGCAATTATGTTAAGAAGATTCTAATGAGCTCTTTGTGAATCCTACACGAGATGCACCTACATTTGGTAGAAGGTCGAAGGGGTGAAATTGGTGGATTGTTATCCATAAAACACTGGTGGCTGTTGGTGATGGTTAAAAAACCTTTTTATTTTTTATTTTTTTACTTATCACGTCTCACCACATGCACTTAGCAAAGCTGTGGGATTTCAAATTTGGCGCACATGAGCTGCTATTAAGACACGATATTTGAAGCAATGGATGACCATTGACTTTCATTGTGTTTACATATAAGGTTGAAATCAGAGGAAAATCCAATGGTCAAGATTTGTTGTGTCAAATCTTATGTTTTATATTGTCTAAATAGACCATCCTACACACACGTATAGGCGTGCGCGCATGCAGTAACACAATTTCTTAATGCCACAACCCTGATAGGAGTTGACATGCATTTTTATTTTAAATAACAACACACATATATTGCTCTAAAGCTGAATTATGTGTATAATCAACATTGCAGTAGCAACTTTCTTGGAAATATGAAAAGGACACAACATATTATATATGATATCTATCTTTTCACAGTCTGCAGAAGTATATGCTGTTTTAGGATGAATGATTAAGTTGGCAATAAATGTTTGTTATTTGACAATGCTTTGTATCTTCATTGCATATTATTTAAGCACACTATATTGTAGATATTTCTTTCTTTATGCAATAACATATCCATTAATTATTGAAGTGAGTTAGAGAAGGTGGAATAATTTCTGATACCTTTTGGAAGTTTTACACTGCTGGAATTTGTATCTCACCATCTCCCCTCCTCGTAACCCAAAGGACAAATCCCCATTTTCTCTCCTCTAACCCCCTCAATATGGATTTCCAGAATTTCTACCCTGCATGAAGCCAAATATACACTCATACACTCATTGTATTTTATAGGAATTTTATGGTAAAGGTTATCCCTACCGTTTAGATAAACTAACATCGTATCATTTTTACCAACTAGTCAAAAATGAATACCATTATTGGTACTACTAGTATACCAATAAATTGGTAACCATTAAATTGGTTGCGATAAATTATCGTTATGTTTAAAAAATCAAAAGGCTTGGTTCTTTTTAATGGTGATTCATCATATGTTTCATCACGCCACTTAATAAGATAAGTCAACGACAAAGAAAAAAACATAACTAACATTATTTGAACTGATTTTCTGAACTAAATATGGTTACTAGCATGCTTCAAATACTTGTAATACAACTGATCTAGAAATACTCATGTATTATAACACTGTTTGATGAATTTCTCACAAAATTACTATGTAGGTAAAAAATTAGCAAGCCTATTGATAAAAAAAATCAAAGTCGGTAACTACTCTCTTTATTATTTATTTTTTGAATTAAAGTGGAGTATGCAGATGAAGATGGAAGTCGAGAGTGAAAAGTTATAGATATTAAGAAAGATGTTGTAAACCCTAAAAATTAAGTATCAACATCTCTTAAGAAAGAAATACAACGGTTAATTAACAAAATATGCTTTAAAAGGTGTATATATATCTATCATTTTGAAAAAAAAATGTTTTAATAAAATAAAATAAATGAACGGATTGGTAGTCAGTTTTGAAAAAATATTGCCGATGTTTTATCATTGTAAATAATGAATTTAATGTTATAATATATATTGTATTGAGATACCGACTTAGCTGGAAAAATATGGCAATCAATTGATTGGTAATGATGTGGTAATGGTAAATATACCGTTATCAATTATCACAACAATCCTAATCTTTATCCCTCTTTCTCTATTGTTTTTTTGAAAAATATATTAAATTATATTGCGACTTTTTAGATTTATGGGTTTGAATTGCAACTAACTATTTTGGATTTCAAATTCGAATTTATTTGAGGTGTAATTTCTTCATGTTAGTCAAGCCAAATGGTCTTCATCGTACATGCTAATATGGAGCTTAGGAGACAATGGTAGCACACTAGGGTTAGATGAGGTTGACGATGATACCATGCTTGGATTATATGTTGTTGGTGATAGTATCACCTTAGGTTGGAACGAAATTGGTTAGATGAGTTTGATGATGATACCATGCTACTTAAGGTGTGGATGTCGTAATCATTTGTAGCAGTAAAATAAAAGATTGGATATGTTTAAATCATCGTTTCCAAACTTCGTTCAGAATTGAATTTTTGTCGCTTTTGTATAAAATTAAAGAATTTAAAATAACATTTGAAAAATAAAGTGAAATCGTGGTTTTTAAAGAGCTAGCTCATGAATTTGTCCATTTAAAATATATTGTTCCATTGGAAGTGGATGGAGAAAATCAGAGGATAAATAGAATTAGCCTCAATCATATAGATCTCACCAATTTCTTTGCTGTTACCCTCAAGGAAGATTTTGCAATTAATATGATTGACAAAATAAAAAAGCCATGACCATCCCTTTCTAAAAGTTATCACTTGACCATTCATCCAAAGATTTGAAAATAAAGACCTCATAATCATTCCCACTAGTTTTTTCCATCACAAGGAAAGAAGTATGACAATCTATCGAATTCTGGATTATAATTATTCCAAATTGGCTGCTGACCATCTGAACTTGTTTAGTTATCCAAGCATCATTTATACATTCTAACACAAAATAATCTTCTTCATGGTTCATACATGGTAACAGTATGCATGCAAAATACATAATAGGAGATCATTTTTTCCTTGCATGCATTAGTGAATGCTATGATGATTTTCATACATGAACAGAGGGATACCAATGGGCTGACTTCTGAGAATAGGGAACTTAAACTGCGACTGCAAGCTATGGAACAACAAGCTCACCTTCGTGATGGTACGTTTTACATAGTCTTCGAGGTCAAAATTATCACTTCCTGATCAACATGTTATCTTACAGTGAGACTTCTGTAACTTTACTGTTGTTTATATACAGCTCTGAATGATGCACTGCGAGAAGAAGTTCAACGTTTGAAGAGAGTTACTGGAGAAATGCCGAATATGAACGTGAATACTTATGGCAGACAGTTGTTTCTTTCGAATCCCCAAAATGGTCAGCAGTCTTATTCTCAGTCTGCATCGGATGCACAATCTCAGAGCAGCCGGTCGCAGACTGATTCTATGGACTACATCTGAACCTTCTAATGCTTACTTTTAGTTAACGTTGGTTAGGGTACAGCTAAGTGTATATTGGGGACAGAAGTTGCTTGTATCACTTTCATATCACTGTATTTTATTATGCATCTTTAGAAAGTTAAAAGACTGTTTCAATCTTATATGTATATTACGTATGTGGCTGGACTGGTATATTAAAGGTCGTTTTTATTTTGGTTATCCGTCTGGTCTGGTATAATATGTAAACTAGTGTGTAACCC

Functional annotation

Database	accession number	e-value	annotation
nr	PKA61533.1	6.2e-57	Transcription factor VIP1
Swissprot	O22873.1	3.0e-40	bZIP transcription factor 18
trEMBL	A0A2I0B155	4.4e-57	Transcription factor VIP1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G43700.1	48.07	8e-52	200	SUE3;VIP1	VIRE2-interacting protein 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G08172	AT1G43700.1	285	96	6	3	235	23	307	48.07	8e-52	200
AfisC2G08172	AT2G40620.1	222	103	3	3	220	26	246	51.35	6e-48	187
AfisC2G08172	AT1G06070.1	144	44	2	101	239	189	332	65.97	2e-46	182

Ortholog group

Species	Genes
Allium cepa	g106955.t1
Allium fistulosum	AfisC2G08172
Allium sativum	Asa6G01126.1
Arabidopsis thaliana	AT1G43700.1
Oryza sativa	LOC_Os11g06170.2; LOC_Os12g06520.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00170.18	bZIP_1	Family	124	182	34.7	1.2e-08

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0000828	F	inositol hexakisphosphate kinase activity
GO:0000829	F	inositol heptakisphosphate kinase activity
GO:0003682	F	chromatin binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005829	C	cytosol
GO:0051019	F	mitogen-activated protein kinase binding
GO:0005654	C	nucleoplasm
GO:0007231	P	osmosensory signaling pathway
GO:0008272	P	sulfate transport
GO:0009294	P	DNA mediated transformation
GO:0009555	P	pollen development
GO:0009652	P	thigmotropism
GO:0009817	P	defense response to fungus, incompatible interaction
GO:0009861	P	jasmonic acid and ethylene-dependent systemic resistance
GO:0009970	P	cellular response to sulfate starvation
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0032958	P	inositol phosphate biosynthetic process
GO:0043565	F	sequence-specific DNA binding
GO:0043621	F	protein self-association
GO:0045596	P	negative regulation of cell differentiation
GO:0051170	P	nuclear import

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K20557	VIP1; transcription factor VIP1	EC:-	MAPK signaling pathway - plant	ko04016

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network