result

Gene information

Detail information of AfisC2G08267

Location

Gene	Chr	Start	End	Strand
AfisC2G08267	chr2	1354941511	1354942643	-

Sequences

CDS

>AfisC2G08267
ATGGATCAATCCGAAGGAAGCAACACCACCCCTGCTTTAGACTTGGTCGACCCTTCCATAACTAATTCAGCGCCAGCGGTGTCTACCACCGCAGCCCCAAAAAGATCAAACAAAGACCGGCATATCAAAGTCGACGGCCGTGGCCGTCGGATCCGCATACCCGCCGTTTGCGCAGCCCGCGTTTTCCAGCTCACCCGGGAGCTGGGCCACAAGTCCGACGGCGAAACCATAGAGTGGCTCCTCCACCATGCCGAGCCAGCCATCATCGCCGCCACCGGCACTGGAACCATCCCCGCCAACTTCTCGTCTCTGAAAATCCCCCACCGCACCAGCGCCGCCTCCTTCTCCGCACCTAATTCGTCCAAGCCCGCTCCACACTCCTTCCACTTCCCCTACGCCCTCAACCCCCAACTTCATCAGTACGACGGCGGAGGATCTTCTTTTGTGAGCTTCCACCAGCATCCGCAGCAACAACCGCCCTTGCTGACGTCTCATCCGCCCGGAGAGGGAAACGTGGATGGAAGTAATCGCACCAAAAAGCGGTTCAAAGAGAAGGAAAGGCTGACCTCGTCGGAGCGGGGGGAGAAGCGGACGAGGGCGAACGTGGCACAAGCAACCGCAATGTGGGCGGTGGGGCCCACAACGAGCGGAGGTGGAGGAGCCTTCTGGATGCTTCCTGTCTCCACTGGATCAAACTGCAATCCCACGGAAGGCAGTAATACTAGTGCTAATAATTTGCCAATGTGGACGCTGCCTTCGCTGCCTGTGGCCACTCCGTTCGGGATGTCGAACACTGTACAAGCGCCGGTGCAGTTTATGTCAAGAGTGGCTGCTATGCCGACCATGACCTCCATGTTGGTGGGCGTGGCTTCGCCTCAGGCTCATTTGGGTTTGGGCATGGATGCTAATTTTAACATGGTTGCTGCACTTAATGGTGCTTATGGCTCTGGAAGACTTAATGTGGATTCGGAGCAGGAGCAGCGAGGGAATGGTAGCATCGATGATCCTCAAACCGCTTCTCGGTGA

Protein

Gene

>AfisC2G08267
AATTACTACTGGGCACCACCAGAAACACTTACAGTCTATTAACTGAGAAACAATGGATCAATCCGAAGGAAGCAACACCACCCCTGCTTTAGACTTGGTCGACCCTTCCATAACTAATTCAGCGCCAGCGGTGTCTACCACCGCAGCCCCAAAAAGATCAAACAAAGACCGGCATATCAAAGTCGACGGCCGTGGCCGTCGGATCCGCATACCCGCCGTTTGCGCAGCCCGCGTTTTCCAGCTCACCCGGGAGCTGGGCCACAAGTCCGACGGCGAAACCATAGAGTGGCTCCTCCACCATGCCGAGCCAGCCATCATCGCCGCCACCGGCACTGGAACCATCCCCGCCAACTTCTCGTCTCTGAAAATCCCCCACCGCACCAGCGCCGCCTCCTTCTCCGCACCTAATTCGTCCAAGCCCGCTCCACACTCCTTCCACTTCCCCTACGCCCTCAACCCCCAACTTCATCAGTACGACGGCGGAGGATCTTCTTTTGTGAGCTTCCACCAGCATCCGCAGCAACAACCGCCCTTGCTGACGTCTCATCCGCCCGGAGAGGGAAACGTGGATGGAAGTAATCGCACCAAAAAGCGGTTCAAAGAGAAGGAAAGGCTGACCTCGTCGGAGCGGGGGGAGAAGCGGACGAGGGCGAACGTGGCACAAGCAACCGCAATGTGGGCGGTGGGGCCCACAACGAGCGGAGGTGGAGGAGCCTTCTGGATGCTTCCTGTCTCCACTGGATCAAACTGCAATCCCACGGAAGGCAGTAATACTAGTGCTAATAATTTGCCAATGTGGACGCTGCCTTCGCTGCCTGTGGCCACTCCGTTCGGGATGTCGAACACTGTACAAGCGCCGGTGCAGTTTATGTCAAGAGTGGCTGCTATGCCGACCATGACCTCCATGTTGGTGGGCGTGGCTTCGCCTCAGGCTCATTTGGGTTTGGGCATGGATGCTAATTTTAACATGGTTGCTGCACTTAATGGTGCTTATGGCTCTGGAAGACTTAATGTGGATTCGGAGCAGGAGCAGCGAGGGAATGGTAGCATCGATGATCCTCAAACCGCTTCTCGGTGAACTTTTCGATTTTATTTGTTAAAATTGGTGGTTGAGTGCGTTAAATAATAGTTAT

Functional annotation

Database	accession number	e-value	annotation
nr	KAA8536570.1	6.9e-53	hypothetical protein F0562_029048
Swissprot	Q9C518.1	6.5e-40	Transcription factor TCP8
trEMBL	A0A834ZQX1	7.4e-57	TCP domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G58100.1	43.17	1e-50	197	TCP8	TCP family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G08267	AT1G58100.1	315	140	11	34	317	57	363	43.17	1e-50	197
AfisC2G08267	AT1G72010.1	323	128	12	31	317	57	344	38.39	1e-39	160
AfisC2G08267	AT1G35560.1	288	112	12	34	305	52	297	40.97	1e-39	160

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03634.10	TCP	Family	36	191	121.8	3.2e-35

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000987	F	core promoter proximal region sequence-specific DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009653	P	anatomical structure morphogenesis
GO:0007623	P	circadian rhythm
GO:0008283	P	cell proliferation
GO:0008361	P	regulation of cell size
GO:0009735	P	response to cytokinin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0010029	P	regulation of seed germination
GO:0010229	P	inflorescence development
GO:0010252	P	auxin homeostasis
GO:0031347	P	regulation of defense response
GO:0031540	P	regulation of anthocyanin biosynthetic process
GO:0042023	P	DNA endoreduplication
GO:0048364	P	root development
GO:0048467	P	gynoecium development
GO:1900056	P	negative regulation of leaf senescence

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K16221	TCP21, CHE; transcription factor TCP21 (protein CCA1 HIKING EXPEDITION)	EC:-	Circadian rhythm - plant	ko04712

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network