result

Gene information

Detail information of AfisC2G08382

Location

Gene	Chr	Start	End	Strand
AfisC2G08382	chr2	1375615268	1375616997	+

Sequences

CDS

Protein

Gene

>AfisC2G08382
TATTAACAACTCTCCCCTCACTTGCATTTTCTATCTAAAACAGAACAAAACACAATGAAAACTACACAAACCGAAAATACAAAGTTAAACAAAGAAGAAGGGTTGATTCAAAACAACTTGGATCTTAGTCTAGGCATGTCCACTAACACTGGTCATGAAACTAGTATTCCAAAATCTAAGTTTATGGGAAGCTCAAACGCATTTACTAATGATAATGCAACAAAAAGAATGCGCTTTGATGAAGCATCAAACTATAGTATGAATAGTGGTAACGTCTTCATCGATCCTTGGAGCTTGGCTGCACGTCAGCAAAAGGCAGTTTTCGAGCAGGCTCGTCCTTTGAATACTACCAATTTTTCCTCATCTCCTCAGGTTTCCAGGTATAACCTCTCAGTTAATTTCAATAAATGAGTATATTCATGTGGTTTTAGGTTTGGGTTTGTGACCAAAATGATATCATGGAATTGAGTTTGAAACTTATATAGACATAAGCATATGAATCGATGATATATAATAATGAGCCATCTTGTTGGTATATCAGCTTATAATCTTTTAGTGTTATAGTACATGTTTATTTTTCTCAAAGCAATTACAATGTTAAATCTTTTCTATGAATTCTTTTGACTCCTAAATGGAAAAGATGTATATTCATATTTTGTTAGATTCAGTCATCTACCGATAATTGGGTGGCCGCCAATTCAGGCCTCTCGTAAAAACTTGGTGAGCCCAAACACTGTAAAGACCGAGATGGATGAAGAAAAAAATTCAAGAAAGGGAAAAGTGAATTCAGAAGAAAATAAAGAAAAGGATGGAACGGCTAATCAAGAAGCCATGATAAAATCTGCAATGTTTGTTAAGGTAAATATGGAAGGCTTATCTGTAGGAAGAAAAATCAACCTTAATGCTCATCACAGCTACGAGTCTCTCTCTTGCGCTCTCCAAACGTTGTTCGTCAATTTCACTTCTTGTATGTTAACTTTATTTACAAATTCTTCTTTGCAAAAGATGTGTATATGGACTAAAGTTTAAACTTAACTATCTTCTGATATAATCAGCTAATTACACAACTAATTTGGTGCAAGAAGAGAAAGAAGATGTCCTCAATTCAAACCATGTTATTCTATATGAAGACAATGAAGGAGATCGGATGCTTGTTGGAGATGTGCCTTGGGAGTGAGTCAGTTGTATAATGTTTATTGATTTTAATTGTTTCTTAGGAAGATAGTATAATATTTACATGCACTGTGCAGGTTGTTTCTGACTTCAGTGAAGAGGCTCTACATTACTGGTAGGACAAAAACAACAAGAGGAGGTAGCGATATTGCATGTACTGAGATACTTGCTCCAGTAATTTTAAGTTGAATTCTTATTGAAAAGATATTTTAATTTCAGATGAGAAAGCGAAAGATATGCAGAGTTGAGATTCTTCACGACAATCGGAACTAAAAGAAAACTTTAATCCTCCATTTTGCAATAAGACAAGTGCAATAACAAGATTATTGGACATGTTAATTAAGTTCAGCTCAAGTAACATTATAACTGCCTAATTCAGTTGTAGTTGTGTTTTTACTCAAAGAAATTAGTCAGCTATAATGTTCCTACCTTTTTATGTATTAGTTTCTTTTTTTTTGGGTTTGTTTCATTTGTCTTCTAAATGGCCTGATGACCTGAGATCAATGATGTTACTTGAGAGAGTTTAAATATCTTGTATGGGAGAAGTGTAAATTAAT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020246624.1	1.1e-46	auxin-responsive protein IAA25-like isoform X1
Swissprot	P0C128.1	4.5e-34	Indoleacetic acid-induced protein 25
trEMBL	A0A5P1E567	7.6e-47	Auxin-responsive protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G16500.1	36.87	2e-29	126	IAA26;PAP1	phytochrome-associated protein 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G08382	AT3G16500.1	179	92	4	96	261	77	247	36.87	2e-29	126
AfisC2G08382	AT1G51950.1	153	86	3	114	261	96	245	38.56	1e-26	116
AfisC2G08382	AT2G33310.3	164	86	4	102	261	68	221	39.02	6e-26	114

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02309.13	AUX_IAA	Family	23	261	159.8	8.8e-47

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0005634	C	nucleus
GO:0009880	P	embryonic pattern specification
GO:0009414	P	response to water deprivation
GO:0009506	C	plasmodesma
GO:0009611	P	response to wounding
GO:0009630	P	gravitropism
GO:0009733	P	response to auxin
GO:0009753	P	response to jasmonic acid
GO:0010051	P	xylem and phloem pattern formation
GO:0010102	P	lateral root morphogenesis
GO:0045892	P	negative regulation of transcription, DNA-templated

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14484	IAA; auxin-responsive protein IAA	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network