result

Gene information

Detail information of AfisC2G08472

Location

Gene	Chr	Start	End	Strand
AfisC2G08472	chr2	1394170039	1394174424	-

Sequences

CDS

>AfisC2G08472
ATGTCTATGAGCAATGATAATGAACCCCTAAGCCTTGGGGCACTACTATCCAATGATCCTCCTCAAACTTTGAAAGAAAAACATGCTGTGATGAAATCAATACGTGGAAGCACGAGTAGTTTGAAGAGCATTGAAACTTCATTATCTTCGAAAACTTACCATCCTCCTTCTCCAACCACCTCAATCTCCGAATCCAACATAATGGCCACCTCTGAACTCGAGGTAAACAATAACAACAATACCATCCCTGCCAACTCTTTAATCCAAAACCTAAGATTTGATGCCGAACTGGATGGAGAAATTCAATCTCCTACTAACTCTATATGGGACTCTTTATTCTCCGATCAAATCGATGCCTCGGCTGACTTCATGTTAATATCATCCCCTAGAAGAGAGTTCATGATATCTTCTCCTAAAAGAGACTGCATGATGTCTTCTCCATTAAGAGACTACATGATCTCTTCGCCTAGGAGAGACTACATGATCTCTTCCCCAAAAAGAGAGTACATGGTAGCATCTCCGAAAAGAACAGGCATGAGTAGCATGAGCACTGCTTCCATGTACACTCAAAATTTCGGCTATGTTCATGGAGCTCAAGGAAATAATAGCAACCTTAAAGGAAAGTCACAAAGTCCTCTCCATAAAGTTTTCAATGTTTCTTCTTCTTCTAACACTGCAGCTCAGTACGATGCATTGCTAGAAGAATTTGGCTTGTACTCAAATTTCAAGGAAGAAATTACACCAGAGGTGTATGATGTGGCAGCCATAGGAGGGATGACGGCTACTTTAATGGAATGCATGTCGATGCCTAGCATGAGTCTGAAGTATGAAGATGACAATAGTAGCATCGGAGTCGGAACTCAAATTAGTAATAATAGCAATGCACTACCTGATTATGGAATGATGATGAATGGAAATGTAAATTGCTATAACTCTCAGTCTCAAAGTGGAGGTTTGATGATGGGGAATGCGTCTAATAATCAAAATCATGATCTGGATCAGGATGACAATGGGCTCCACCTAGTCCATCTTCTTTTGGCCTGTGCAGAATCAGCAGCAAAAGATGACTACATCTCGGTACAACGCTACCTTCACCATCTGAACCTCATCGTATCGCCGCTTGGCGACTCCATGCAACGTGTTGCCTCATGCTTTGCAAATGCCCTCTCATCCCGCCTCTCCCCTCCACCAATTGTCCCTCCCACAGCGAACATATCGTCCACTCTTGACACCCTTAAAATATATCAAATACTATACCAAGCTTGCCCCTACATTAAATTCGCGCATTTCACCGCCAATCAAGCCATATTTGAGGCTTTCGAGACTGAAGAACATGTGCATGTGATCGACTTGGACATTCTACAGGGCTATCAGTGGCCAGCATTTCTGCAAGCGTTGGCTGCCAGGCCCGGTGGGCCTCCGAGTTTGAGGATAACTGGGGTGGGGTACCCTGCCGAGTTGATTAGAGAGACGGGTAGACATCTTGCTGAGCTGGCTCATTCTTTGGGGGTCCCGTTTGAGTTCCATGTGGCAGTAGCGGATAGGTTGGAAGAGCTTAGGCCTCATATGTTGCATAGGAGGGTTGGGGAGGCCCTTGCCGTTAATTCTGTTAATAGGCTTCATCGTGTTCCTGGATCTCAGCTTGGCAATCTCCTATCAATGATCCGGGACCAAGCACCAAACATAGTAACCTTAGTAGAACAAGAAGCAGCCCACAACAGCCCACACTTCCTACCCAGATTCCTCGAAGCTCTCCATTACTACTCTGCCATTTTCGACTCGCTCGATGCAACGTTTCCTTCCGACTCAACCGCACGTGCAAAAGTAGAACAATGCATCTTCTTGCCTGAAATACGCAACATTGTAGCATGCGAGGGGCCATATAGAGTAGAAAGGCATGAAAGGCTGGAAAAATGGAGGAAAATAATGGAAGGAAAAGGATTCAAAGAAGTAGCGTTGAGTCAGAATGCAGTCACTCAGTCTAATATATTGCTTGGGTTGTACTCCTGTGAAGGCTATCGACTGAACCAAGATCAAGGTTGCTTGTTGCTTGGATGGCAGGATAGAGCTATTATTGCTGCCTCGGCATGGCGGTGTTAG

Protein

Gene

>AfisC2G08472
TTTGATCTCGAGTCATTTTCATGAAATTCTTTCAACGGATAGCTTATTATCTAAATTATGCTGGCCATAATACACACATGGGTCTTCCTACTATAGAAATCAATCCCTAGTTCCTATTTCTCTTTACAGTTTCATTTTCCAGCTCTCTTCTCCTAATCTTTTGGCAGCACACCACCTTTAGTTTACAACAGATACAGTAAAAAGGAGAGAATATCTAGTATTTTGAATGCTTTAAAGTTTAAATATATATTATTACTTTCACGTTACAATGTCTATGAGCAATGATAATGAACCCCTAAGCCTTGGGGCACTACTATCCAATGATCCTCCTCAAACTTTGAAAGAAAAACATGCTGTGATGAAATCAATACGTGGAAGCACGAGTAGTTTGAAGAGCATTGAAACTTCATTATCTTCGAAAACTTACCATCCTCCTTCTCCAACCACCTCAATCTCCGAATCCAACATAATGGCCACCTCTGAACTCGAGGTAAACAATAACAACAATACCATCCCTGCCAACTCTTTAATCCAAAACCTAAGATTTGATGCCGAACTGGATGGAGAAATTCAATCTCCTACTAACTCTATATGGGACTCTTTATTCTCCGATCAAATCGATGCCTCGGCTGACTTCATGTTAATATCATCCCCTAGAAGAGAGTTCATGATATCTTCTCCTAAAAGAGACTGCATGATGTCTTCTCCATTAAGAGACTACATGATCTCTTCGCCTAGGAGAGACTACATGATCTCTTCCCCAAAAAGAGAGTACATGGTAGCATCTCCGAAAAGAACAGGCATGAGTAGCATGAGCACTGCTTCCATGTACACTCAAAATTTCGGCTATGTTCATGGAGCTCAAGGAAATAATAGCAACCTTAAAGGAAAGTCACAAAGTCCTCTCCATAAAGTTTTCAATGTTTCTTCTTCTTCTAACACTGCAGCTCAGTACGATGCATTGCTAGAAGAATTTGGCTTGTACTCAAATTTCAAGGAAGAAATTACACCAGAGGTGTATGATGTGGCAGCCATAGGAGGGATGACGGCTACTTTAATGGAATGCATGTCGATGCCTAGCATGAGTCTGAAGTATGAAGATGACAATAGTAGCATCGGAGTCGGAACTCAAATTAGTAATAATAGCAATGCACTACCTGATTATGGAATGATGATGAATGGAAATGTAAATTGCTATAACTCTCAGTCTCAAAGTGGAGGTTTGATGATGGGGAATGCGTCTAATAATCAAAATCATGATCTGGTTAGTATCTCTTTCTTTTGTATTGCTATCTTGTGGACATTTTAGTATAACTAATGGTTAGATTGTCATGTGAATATAGTTTATTTTCATATTACTCATTGTTGTCAAAAACCTAAAAATCATACAATTTAAATTCTGTTTTAGATCGAATTTCTCATTTTACAATTTGATTTGATTTATATACAGAGTCAAACCTAGTTAAAATCATGGTTATGAAAAATCATTCAATATATACTGATATATTTAATATGTTTGTTTCGATTCACAATTCCAATTCAAATGTTTTTACTGCATAAAATAAAAATGTAATTAGAGAGATAATTGAGTTTTAGGTAACTTTGCGATTTACTTTATGAATTCCTTTGTGAGAATTTTGTCATTAGCTTAAGATTTAGGTGATCCAAGAAAAATGTTACTTTTTCCACTTTCTACGTGGTGCTATACCATATAGAGATATGGATATGTAAACCACATTTGTCATGTGGGATCCACATGAAAAATTTGATAGGAAAATTTATCATCTAGAAAGTGATAAAACCAGCGGTCTTCGTATTTATCTATGGCTCTTATATACATATATAGATATACATATATATATGCATATATAGATATGTATGTGTGTGTGTATATATATATATATATATATATATATATATGTGTGTGTGTGTGTATGTATGTATGTATATATATATGTATGTATATATACACACACATATACACACATACACATACATGTACATGTACACATACATATATTCGGGTCTCCATATTTGTATGTAAAGACTTATTCCGCCCCTAACATACAATTGGGTATTTATGCACAGGATCAGGATGACAATGGGCTCCACCTAGTCCATCTTCTTTTGGCCTGTGCAGAATCAGCAGCAAAAGATGACTACATCTCGGTACAACGCTACCTTCACCATCTGAACCTCATCGTATCGCCGCTTGGCGACTCCATGCAACGTGTTGCCTCATGCTTTGCAAATGCCCTCTCATCCCGCCTCTCCCCTCCACCAATTGTCCCTCCCACAGCGAACATATCGTCCACTCTTGACACCCTTAAAATATATCAAATACTATACCAAGCTTGCCCCTACATTAAATTCGCGCATTTCACCGCCAATCAAGCCATATTTGAGGCTTTCGAGACTGAAGAACATGTGCATGTGATCGACTTGGACATTCTACAGGGCTATCAGTGGCCAGCATTTCTGCAAGCGTTGGCTGCCAGGCCCGGTGGGCCTCCGAGTTTGAGGATAACTGGGGTGGGGTACCCTGCCGAGTTGATTAGAGAGACGGGTAGACATCTTGCTGAGCTGGCTCATTCTTTGGGGGTCCCGTTTGAGTTCCATGTGGCAGTAGCGGATAGGTTGGAAGAGCTTAGGCCTCATATGTTGCATAGGAGGGTTGGGGAGGCCCTTGCCGTTAATTCTGTTAATAGGCTTCATCGTGTTCCTGGATCTCAGCTTGGTGAGTTTTGATTATTATTATTTTGTATATATCAGAATTTAAATCCCTCTGTCGCCATTTTAAATGTAATTTAATCATTCGATTCTTGTACAAGAAAGTAAAAACGATAACTGAATTGTGACAAATAAATATTCTACCAAGATACAATGACTACAGCATTCATGTTATTAATTCATTAAACTTTTATTGTAACTGTTCTTGTTAAAGTTCAAATGGTAGGCATACATCACAACTTCAGTTCTGAATCTGTTCCGATTTTACCTGAACAAACCTTTAGGATGCAGTTTTCCTAACTATTACAATTTGATTCCAAGAACCAAAATATCCTTTCGATAGTCCTAAAATATGTTCAGTGAGATCAGACCAGATGGTGTCTACTTGCTACCCCTAGCTTTGTCTTTTTATGTGTCTTGTAGACATGAGCGTGCATAAGTTCGAGTATTACCTTTTAAAGTACATGGCAACCATCCTTTTTGATATATAATGCATAATGACTACGGATTAATGGATGCATCTAAAATTCACCATTTATGGAAACACAATACTGATCATTCCCTTACGTAATGAACTAACTACTGAACTTAGAATTGAAATAGTATTGTTATACTTGCCTCTAAAGCTAATTAAGAGAAGTCAACTGTTTTTAAATTAACTCTAAACTAACTTTCTCTGGCCTTCTTTTCCGGGCCTTATAGAATACTGTATTTACGGGATTAACGCCTACTATTAGAGGATTTATATATGTTATATGTAATAACACAACTAGTTACCAGTATATTTTGAGACCCCTTTAAAATCCAGTTTATAAAGTAGCCATACTTTGATAAATTGTTGTTATATTAAGCATGTATTCTCTCCGTTAACATGCTCATATTCCTGCATCTTTACAGCCAGTAATATATTGTTATTCTTCTAGAAAGTAATAGGTCAAAATCAAAAGAAGTACTGGTGTTATCAATTAGACCAAGTTTCTCCTGATAGCCCATAACTTAGCAAACTTCAATATGAAAGGGGAAAAAACAGTTCAATCTGCAGAACAGATATTATGGATATATGATTCAACTGTTGCTTAAATCCGTAATGTAAATATTTACAATGAATACTGCAGGCAATCTCCTATCAATGATCCGGGACCAAGCACCAAACATAGTAACCTTAGTAGAACAAGAAGCAGCCCACAACAGCCCACACTTCCTACCCAGATTCCTCGAAGCTCTCCATTACTACTCTGCCATTTTCGACTCGCTCGATGCAACGTTTCCTTCCGACTCAACCGCACGTGCAAAAGTAGAACAATGCATCTTCTTGCCTGAAATACGCAACATTGTAGCATGCGAGGGGCCATATAGAGTAGAAAGGCATGAAAGGCTGGAAAAATGGAGGAAAATAATGGAAGGAAAAGGATTCAAAGAAGTAGCGTTGAGTCAGAATGCAGTCACTCAGTCTAATATATTGCTTGGGTTGTACTCCTGTGAAGGCTATCGACTGAACCAAGATCAAGGTTGCTTGTTGCTTGGATGGCAGGATAGAGCTATTATTGCTGCCTCGGCATGGCGGTGTTAGATAATGTTAGATTATATAGATGTTGATTTGATATTAATTTAATTTAAATTGGGATTTTAAAGAAGCTTGTATACTATGAATTTAAG

Functional annotation

Database	accession number	e-value	annotation
nr	THU50487.1	7.3e-174	hypothetical protein C4D60_Mb06t20740
Swissprot	G7L166.1	4.7e-162	Protein REQUIRED FOR ARBUSCULAR MYCORRHIZATION 1
trEMBL	A0A4S8IPG7	5.2e-174	GRAS domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G66350.1	47.73	7e-90	328	RGL;RGL1	RGA-like 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G08472	AT1G66350.1	375	179	9	332	699	143	507	47.73	7e-90	328
AfisC2G08472	AT1G14920.1	379	186	12	332	698	160	529	45.38	7e-85	311
AfisC2G08472	AT2G01570.1	378	195	9	332	698	212	581	43.39	4e-82	303

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	341	698	436.1	9.1e-131

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0006351	P	transcription, DNA-templated
GO:0006808	P	regulation of nitrogen utilization
GO:0008356	P	asymmetric cell division
GO:0009630	P	gravitropism
GO:0009723	P	response to ethylene
GO:0009737	P	response to abscisic acid
GO:0009863	P	salicylic acid mediated signaling pathway
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0009938	P	negative regulation of gibberellic acid mediated signaling pathway
GO:0009956	P	radial pattern formation
GO:0010187	P	negative regulation of seed germination
GO:0010218	P	response to far red light
GO:0010233	P	phloem transport
GO:0044212	F	transcription regulatory region DNA binding
GO:0033206	P	meiotic cytokinesis
GO:0042176	P	regulation of protein catabolic process
GO:0042538	P	hyperosmotic salinity response
GO:0042803	F	protein homodimerization activity
GO:0043565	F	sequence-specific DNA binding
GO:0048364	P	root development
GO:0048366	P	leaf development
GO:0051457	P	maintenance of protein location in nucleus
GO:2000377	P	regulation of reactive oxygen species metabolic process
GO:0090610	P	bundle sheath cell fate specification
GO:2000033	P	regulation of seed dormancy process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14494	DELLA; DELLA protein	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network