result

Gene information

Detail information of AfisC2G08535

Location

Gene	Chr	Start	End	Strand
AfisC2G08535	chr2	1405124598	1405125960	-

Sequences

CDS

Protein

Gene

>AfisC2G08535
GAAACATTTACATTGAAGCAATCGATTATCTTTCGTAAAGGAAAGCAGGAAAGCTATCAATTCAAGAAATTGAATCGCTGCAATCATAAATCAAAAGAAATTTATAAAATATAAGAAGAAAGAAACGTCTTCATCTTCGTCAACCCACCAAATCTACCAAAAATGAAAATAATGGATCCATTATTCGAAAAAGAACTGAATTCTATCAAATCCAAACCACATAAAAAAGCCATGCGGAAATTGAACACGGCACCCGCGTCTAACCTCCCGGAAACCGAACCCCGCTACCGTGGTGTCCGCAAGCGTCCATGGGGCCGGTACGCAGCCGAGATTCGTGACCCGGTAAAGAAAGCTAGGGTTTGGCTTGGCACCTTCGACTCTGCAGCCGCCGCAGCACGTGCCTACGACACCGCTGCCCGTGCCATGCGCGGTCCCAATGCCAAGACTAACTTCCCCTTCCCCGCCCTTCCTCAGCTGCCGGAGATCCACCTTCCAGCGACTAGTGGCATGAGCTCCACCGTCGAGTCGTTTGTAGCCAGGCCGGCGAATCAGGAGGCAACGTATCGGGTAGCGACACGTGTGATTCGAGAGGGTTCGGATTGTAGGAGTGACTGCGGATCTTCGGCATCTGTTGTGGATGATGACGACGTCGCTGGATACGTTGGGAATAGTAGGGCGATTCTGAGGGAGAGAGTTTTTTTGTTTGACTTGAATGAGTTACCAAATGATGATGGTGATGATGATGAAATCGACATTACAGCTTTGAGGTTATGAATGGAAATTTGGTGATTTTTCCTACCAGGTTTTTGATTTCTTACTTTTTATTATGAAATTTTTGAGTTTGATTGCATATGGTGATGTTTGTATACAGATCTTGTATTGTTTGATATATCTAATTGAATGAAACATCTTTCATAAATAGCAATCTCTAATAAATATTAGATATTGTTCTTGTAAAATCTGTTATTTCTTTGATTAGTAGTGCTGTAGATTTATATATGAACTCGTTTAAATAGAGTGTTTCTAAAGGCATCTGATTTTGTTTTAAGTGATTTACTAGGAACATCTCCAAACAATACATATGTACGCAAAAATTGTAATATTAAATATGGAGTAGTGTTGGAATTTCCAAACTTGAGTCCATTTGACTTTTAAACGAGTTCATACAAATTTTACTAATTTTTACATCACATTATTTAGAAGAACTATTAATAGTAATATTAAATCCTTTCTATATACAGTTTTAATAGATTAGATTTCCAAGTCTTCACATACAACCCGCATTCGCATTATATAAATTCATATTGTATAGAGCCCGCCGCCAGTGAGCTTCAGATCTGTAGCATTTCCTTTGTTTTTCTTT

Functional annotation

Database	accession number	e-value	annotation
nr	KAF3326034.1	2.3e-35	ethylene-responsive transcription factor 3-like protein
Swissprot	Q9SXS8.1	1.2e-28	NtERF5
trEMBL	A0A833QN07	1.6e-35	Ethylene-responsive transcription factor 3-like protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G20310.1	79.41	3e-26	115	ATERF-7;ATERF7;ERF7	ethylene response factor 7

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G08535	AT3G20310.1	68	14	39	106	24	91	79.41	3e-26	115
AfisC2G08535	AT1G50640.1	60	10	39	98	25	84	83.33	2e-23	105
AfisC2G08535	AT5G44210.1	63	14	39	101	30	92	77.78	2e-23	105

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	40	90	47.6	1.3e-12

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0001944	P	vasculature development
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0051726	P	regulation of cell cycle
GO:0016020	C	membrane
GO:0005829	C	cytosol
GO:0006970	P	response to osmotic stress
GO:0009880	P	embryonic pattern specification
GO:0009414	P	response to water deprivation
GO:0009733	P	response to auxin
GO:0009735	P	response to cytokinin
GO:0009739	P	response to gibberellin
GO:0009749	P	response to glucose
GO:0009788	P	negative regulation of abscisic acid-activated signaling pathway
GO:0009864	P	induced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010030	P	positive regulation of seed germination
GO:0010105	P	negative regulation of ethylene-activated signaling pathway
GO:0010200	P	response to chitin
GO:0010286	P	heat acclimation
GO:0010445	C	nuclear dicing body
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0019760	P	glucosinolate metabolic process
GO:0031053	P	primary miRNA processing
GO:0034059	P	response to anoxia
GO:0042991	P	transcription factor import into nucleus
GO:0043565	F	sequence-specific DNA binding
GO:0048825	P	cotyledon development
GO:0051301	P	cell division
GO:0070878	F	primary miRNA binding
GO:0071456	P	cellular response to hypoxia
GO:1900150	P	regulation of defense response to fungus
GO:0090708

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09286	EREBP; EREBP-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network