result

Gene information

Detail information of AfisC2G08560

Location

Gene	Chr	Start	End	Strand
AfisC2G08560	chr2	1410181817	1410184487	-

Sequences

CDS

Protein

Gene

>AfisC2G08560
ATGGATTCAAACAAATCAGTCATGAGTCGAAATAAGCTTTGGCTAATTACATTTCTCTTCTTAACATCCCTTGTAGTAAACCTATACTTCTACTATGACAACAGTTTCGCTTTGAGCAGCCCTTTCCTCAGACTGACTTGGACTACCAAGGCAGCAACTGCGGCTGAGAAGGTGGCTGCTATATACTGTTCTGATCATGGCAGAGCTTATTTGGATGGAGTACCGGTTAATGGTGTCCCTATATGCGAGTGTCATAATTGCTACAGCGGTCCTACTTGCTCCGTCTTGGCCTCAAATTGCACTGCCGATGCCACTACGTAAGCAACATCGTTGTAGCTGTACATGCATTTTATTTCTAAATGCATTCCACATGCAACCATACATAGTTAGTTATATTTCTAAATGCATTCCATATGCAACCATACATATATAGTTGCATCTTCTGTTATCAAAAGAGCAAATACACATTAACCACTGAATATACCTGAATGAAACTGGTTATTTTTCTTATTTCACTACTATAGATTATCTTTTTATTTCCACAAATACATTTCCAATGGATTGGCTGATCATCATTGATTTTTACTTGTTTTTATAGTTTTTGGTACTAGTTAATTAACGAGAGTAAGCTAGCTAGCTAGTCTTCAAGATTGATAAAAAGGTAGAGTACAAATAAGATTCAAAAGAATATTGGTATATTTGATTAAACCATCATACCACCATAGGTTATAAAATATTTTAAGAGCTATCCTAAACTTTGCAATTAAAATCAATATAAATTTTGAAAAGCACCATACCATAAAGTTATAATAATTAGAGAACGAAATCAGTGTTAATGACAATTAAATTCATTGCAATTAAAGCATCATTTTCGTATGAAAAGTACATTACAATAACATTTGTTTGATTACTACAATTACTTACTGATTGCTTTACAATGTTTAATCTTATATATAAACCCAGTGGTGATGCAATGTTTCTAGAGACGTACTGGCTCCATCACAGAATAAACACTGCAATGCTGGAATCCGGTTGGCACAGAATGAGCTACTTTATCGGCCATAATTTCATGTCTGATGAACTAGACAGACACATTAGACTTCTACACAATGCAGTGGGCAACGCTAAAGTCGATGATAAATTTCTCGTGTTTGGTAACGGAGTTACGCAACTTCTCAACGGAGTTATTATCTCACTGTCACCAAATGTTACGGCTACACCAACTGCTCCTATAAAGAAAGTTGTTGCCTATGTTCCTTATTACCCTGTGAGTGATGATTATCATTTTATAGCTATGTTATGAAACTACATACGAATGGAAGGGAAATGCATCAGACTATGTATCCTATAAAAAATGTTCTAATTAATATCCCATAACAAAAAAAAACAGGTGTTCAAGAGTCAGACCAGATTTTTTAACTTCAAAGGATACGAATGGAAGGGAAATGCATCAGATTATGTAAATACGTCTAATCCACAAGATTTCATCGAGCTTGTGACTTCTCCAAATAATCCTGATGGTCTACTTCGCAAGTCAATAATCCCAGGTTCTTTAGCAGTATATGATCATGCTACATATTGGCCTCATTATACTCCAATCAAATACGCATCGGATGAAGATATCATGTTGTTTGCTCTATCTAAGTACACAGGACATTCCGGTAGTCGATTTGGGTATGTTACAATTAACATGTTTCTTTGTGCTAACTCAATTAATCTGTAGATTAGTAATAATACTAATATAATGTTTACATTCCTATAGATATTCAGTTGATCTTGATCATACATATCTTATTATCTAATATTTGTGGTTTAGATGGGCTTTTGTAAGGGACAAGAGTGTGTATGACAAATTAACAACATACATATCAACAAACAGTGAGGGAGTTTCGCGTGAAACACAACTCCGAACACTCATGATTATAAAGGAGATTATACTACAAATAAAACAAAACCGTGGTACTATCGGTGACTTCAACTGGTATGGCCATCACACATTGAGGGCGAGATGGGTTCAACTAAACAGCCTGGTGTCGCTATCTACTCGATTCTCCCTTCAGGAAGCATCTCCTGAATATTGCAACTACTTTCAAAGAATCAGAAACCCTTCTCCAAGTATGTTAATTTTATTTCCAAAATGCTCTCGGTAAAGTTAGTAAATCTCCAAATATAACAGTTATATATTTCATTTACAAGTATATCATACAGATTACAGTCAATTTTTTATGGCACTAACTGAATATAATATATTTGAATGCATGCTAGCTTATGGATGGTTGAAATGTGAATGGAAAGAAGACATCGACTGTGCAGCCGTACTTAGAAATGGAAACATCTTGACCCAAAGTGGTGTGCTTTTTGAAGCAAGTAGCCGTTATGCACGTTTGAGTATTATCAAGACGCAAGATGATTTTAATCAACTGATGGAACGTTTGAGCGTACTCGTTAAGGCTAAAAGCCGTACTTCTGGGTATAACTACGATATTATTAATCAAGAAAGCAACGAACGTCCTTTCATTTATGGGGGCAATGAAGGAAGCTACGAGTCTACTTAGTCAAGATGTTTGTTTGTAATTGTGATGTGGTGCCCTTTTATTTTCTTGTTTTCTTATTTTGTCTGGGTTTGATGGTAAGTTATTATGTTTGAAAGGCGAGGAGTAAGAATTGTGAT

Functional annotation

Database	accession number	e-value	annotation
nr	AAF36437.1	3.5e-279	cysteine-sulphoxide lyase
Swissprot	P31756.1	5.2e-155	Cysteine sulphoxide lyase
trEMBL	Q9M7L9	2.5e-279	Cysteine-sulphoxide lyase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G34040.1	44.66	1e-112	403		Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G08560	AT1G34040.1	468	233	10	8	466	1	451	44.66	1e-112	403
AfisC2G08560	AT1G34060.1	475	250	9	8	473	1	460	42.32	1e-110	396
AfisC2G08560	AT1G23320.1	366	219	7	107	465	31	384	34.97	1e-66	251

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF04863.10	EGF_alliinase	Domain	46	100	82.9	1.4e-23
PF04864.10	Alliinase_C	Domain	102	461	563.0	2.2e-169

Gene Ontology

Accession	Ontology	Name
GO:0043231	C	intracellular membrane-bounded organelle
GO:0009888	P	tissue development
GO:0009605	P	response to external stimulus
GO:0009628	P	response to abiotic stimulus
GO:0009851	P	auxin biosynthetic process
GO:0009908	P	flower development
GO:0016846	F	carbon-sulfur lyase activity
GO:0044425	C	membrane part
GO:0044444	C	cytoplasmic part
GO:0048364	P	root development
GO:0048825	P	cotyledon development
GO:0070529	F	L-tryptophan aminotransferase activity
GO:0070546	F	L-phenylalanine aminotransferase activity
GO:0070547	F	L-tyrosine aminotransferase activity
GO:1905392

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K16903	TAA1; L-tryptophan---pyruvate aminotransferase	EC:2.6.1.99	Tryptophan metabolism	ko00380

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network