result

Gene information

Detail information of AfisC2G08596

Location

Gene	Chr	Start	End	Strand
AfisC2G08596	chr2	1416235115	1416237323	-

Sequences

CDS

Protein

Gene

>AfisC2G08596
ATGGAGTCGGGAAAATATGGCAACACAAAGCTATGGCTACTTTCATTTCTAGTCATTGCTTCAGTTGTTGTAAATGTATATTTCTACTACAACAACAACTTTACATTGACCAGTCCATTCCTCAGGCTGTCCTGGACCACCAAGGCAGCCATTGATGCTGAGGTAGTTGCTGCCATTGACTGTTCAGAGCATGGAAGAGCTTACTTGGATGGAGTACCCGTCAATGGTGTTCCAATGTGCGAGTGCCATAACTGTTACAGCGGACCCAGCTGCTCAGTGTTGGCTTCAAATTGCACTGCTGATGCCACTACGTAAGCACTATATACTACATACACATGATCTCTTGCTATAAGCAAGCACTTTATATCACATTAACCCGATCACTGCATAAAAATATAATGTTCATTGTGAGCCCTCAAATTCAAAAATATGTATAGCTCATCTGCTCAAAATACTAAGACTTTAATTGTTCAAATAACTCAGTCGGTGCGTATTTCCTCAGCATGAGACTTATTTGTGAAATTCACATATTACTAGATTGCACATTTCTTGACAACTTTAATCTATATTTGTGTGCAGTGGTGATGCAATGTTTCTGGAGAAGTACTGGCTCCATCACAGAATAAACACGGCAGTTTTGGAATCTGGATGGCATAGAATGAGCTACTTTATCGGCCATAATTTCATGTCCGATGAACTAGACAAGCATATTCGGCTGCTACACAAAGCAGTAGGCAATGCTAAAGTCGATGATAAATTTCTCGTTTTTGGCAATGGAGTGACTCAACTTCTCAATGGTGTAATCATCTCACTGTCACCAAACGTTACCGCTACCCCTGCTGCCCCGATAAAGAAAGTTGTTGCCTATGTTCCTTATTATCCTGTAAGTCGCTGTTATTAATTACAAATAAATTTCTAAAGCAACCTTGTTAAACTAACTAATGAAATTGTATTTGATTTTTTTTTATTTGGTACAGGTATTCAAGAGTCAAACCAAATATTTTAACTTTAAAGGATACGAATGGAAAGGAAATGCATCTGACCACGTAAATGCACCGAATCCCAAAGATTACATTGAGCTTGTAACTTCCCCAAACAATCCTGAGGGTCTGCTTCGCAAGTCTATAATCAAAGGTTCGTTAGCTGTGTATGATCATGCCACATACTGGCCTCATTATACTCCAATCAAATATACATCCGATGAAGACATTATGCTGTTTGCCCTATCCAAATACACTGGACACTCTGGTAGTCGATTTGGGTATGTCATTACCGAATCTGTTTCATTGTATCAAATATTTTCATGTCAATCAATGATATCCTAATATTGACGTCAATGTTGTTGTTTCAGGTGGGCATTTGTAAGAGATAAGGCTGTCTATGATAAACTTACAACATACATCTCAACAAACAGTGAGGGTGTTTCTCGTGATACACAACTTAGGACACTGAAAATTATAAAGGAAATTTTACTGCAAATAAAACTATACAAGGGAACTGTCGGTGACTTCAACGAATATGGATATACCACACTGAGAAACCGATGGATTCAACTAAAAAATCTTATATCTCAGTCCAACCGATTCTCCCTTCAAAAACTATCTCCTGAATATTGCAACTACTTCCAAAGAGTCAGAGATCCTTCTCCAAGTAAGCTTATGAACAAAGTGTTTTTTTATTCTTTCTCTCCTTCTTCTTCTAATGTCCATGTATACTAAACATTAACCACTAAATTGTTAAGAAGTATGCCAATGTTATCCTCAGATGAGCTACTTTTTAAGGCAAAATATAATTATAATTTTAATATTAATTTAAAACTTAACTATTCCATAGGATAGTGATCAATGAGTAGTATTAATTGCGAAGTTAGTCTAAACTCGACTAATGAATACATTATGCTCAATGAAACATAGCTTATGGATGGCTAAAGTGTGAATGGCAGCAAGACACGGATTGCTCAGCCGTACTTCAAAACGGACAAATATTGACCCAAAGTGGAGTGCGTTTTGAAGCAAGTAGCCGTTATGCACGTTTGAGTTTGATCAAGACGCAAGATGATTTCAACCAGTTGATGCAACGTTTGAGCGTTCTTGTAAAGGCTAAACCAACTAGTGCCTCTCAGGAGTACAACTACGAAATGGGTCGACAAAGATCAGTAGAGCGCCCTTTCATCTATGGTGGTGATCAAGGGAGTTACGGGTCTTTCTAA

Functional annotation

Database	accession number	e-value	annotation
nr	AZG03002.1	5.5e-277	alliinase
Swissprot	P31757.2	3.9e-158	Cysteine sulphoxide lyase
trEMBL	A0A3G8G7W4	4.0e-277	Alliinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G34040.1	45.08	3e-111	399		Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G08596	AT1G34040.1	457	226	10	13	460	7	447	45.08	3e-111	399
AfisC2G08596	AT1G34060.1	474	242	11	16	473	6	462	41.98	9e-110	394
AfisC2G08596	AT1G23320.1	366	217	7	105	463	31	384	35.52	3e-69	259

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF04863.10	EGF_alliinase	Domain	44	98	81.7	3.2e-23
PF04864.10	Alliinase_C	Domain	100	459	565.1	4.8e-170

Gene Ontology

Accession	Ontology	Name
GO:0042742	P	defense response to bacterium
GO:0004021	F	L-alanine:2-oxoglutarate aminotransferase activity
GO:0004838	F	L-tyrosine:2-oxoglutarate aminotransferase activity
GO:0043231	C	intracellular membrane-bounded organelle
GO:0009641	P	shade avoidance
GO:0009684	P	indoleacetic acid biosynthetic process
GO:0009723	P	response to ethylene
GO:0009958	P	positive gravitropism
GO:0010078	P	maintenance of root meristem identity
GO:0010087	P	phloem or xylem histogenesis
GO:0010588	P	cotyledon vascular tissue pattern formation
GO:0016846	F	carbon-sulfur lyase activity
GO:0030170	F	pyridoxal phosphate binding
GO:0044425	C	membrane part
GO:0044444	C	cytoplasmic part
GO:0047312	F	L-phenylalanine:pyruvate aminotransferase activity
GO:0048467	P	gynoecium development
GO:0050048	F	L-leucine:2-oxoglutarate aminotransferase activity
GO:0050362	F	L-tryptophan:2-oxoglutarate aminotransferase activity
GO:0080022	P	primary root development
GO:0080097	F	L-tryptophan:pyruvate aminotransferase activity
GO:0080098	F	L-tyrosine:pyruvate aminotransferase activity
GO:0080099	F	L-methionine:2-oxoglutarate aminotransferase activity
GO:0080100	F	L-glutamine:2-oxoglutarate aminotransferase activity
GO:0080130	F	L-phenylalanine:2-oxoglutarate aminotransferase activity

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K16903	TAA1; L-tryptophan---pyruvate aminotransferase	EC:2.6.1.99	Tryptophan metabolism	ko00380

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network