result

Gene information

Detail information of AfisC2G08713

Location

Gene	Chr	Start	End	Strand
AfisC2G08713	chr2	1435491423	1435493131	-

Sequences

CDS

Protein

Gene

>AfisC2G08713
TTAGTGCCTCAAACACCATTCACTTCAAATCCCTTCCTTTGTTTCTCCTTTATCCCTCATTTCTTTCTCTTTCTCTAATAGCCATGGAATGTAAAACAAATTTTTTCCTTTCTATTTACTCTAAGTTTCTTTGTTTCTTCTAATCATAGATTTAAAATTTCTCCTAAGTATTTTGCATTTTGTTACAAGAGTCAAGCCAAAAGAGAAAGTACCACCAGTCTACCAGCAAGTTTCTCCTTGGCAAAATTTCTAAACATTATGCACTATTATTGTTCTTGTTTTCTTCTTTTTTGGACAAGTTCCAATCTTGTAGTCTTCTAAACCAACACAAGTAACTGTTTCAAGTAGTTTTTTTCTTGAGTTGTTCTAAAGTCTATTGTGGTCTACCAGTTGTTTTTCTTCTTTTCATTATGGTGTGAAACAGCAAACGAGTTGAAGAAGATTGAGGTTATCCAGATAAGGTTCATTATAATCCCATATTTTCCAATTTTCTTTGATTTTTGCCTAAAATTATTTAAAGAAAATAGGCAAGTTGGTCTTGATTACTTTTGCTTAATCATTTAGAGCCTCACCCACAAATTAACCACAAAAATTCTCAGACCTTTTTTTTTTTATATACTCAAAAATGGATCATCCTTCTCATGAAGTAGAGATCCCAATGCCACTAAACAGCAATGCTTATCTAGCTCAAAGCCATGAAAACAACACTCATTCAAATGAAGAAATGACCCATCATCACAATAGCATCGTAAAGAAAAGTCCTTTATTGGTGAAATATCGCGAATGCTTAAAGAATCATGCAGCTTCAATAGGTGGAAATGCGACTGATGGATGTGGCGAGTTCATGCCTAGTGGCGAAGAAGGAACTCTAGAAGCTCTGAAGTGCTCAGCTTGTAACTGTCATAGAAATTTCCATCGAAAAGAAATTGAAGGCGAAATTCCAAACTCATCCTTTGACTATTTTAGTCATTTTAAAAGAGAGAAAAAATATATAGGCACAAGTCATCATCACAACGGTGTTTTGATTCCTAGACCAACTCCTCATAACATGATAATGCCGCTAACAATGCAACAGTCGGAATCCGATGAAATGGAAGGATACCCGAGAGCCCCATTTGCAAAAAAGAGGCATAGAACTAAGTTTAGTTCTGAACAGAAGGAGAAAATGCTTGCATTTGCTGAAAGAGCCGGATGGAAACTTCAAAAGCAAGAGGAAAGTGTAGTGCAACAATTGTGTCAAGAAATTGGAGTTAAAAGGAGAGTTCTGAAAGTATGGATGCACAACAATAAGCATAATTATGCTAAGAAGACTTTGGATCATGAAGGTACTGATAACCACACTGCTATTACTGATTCCAGAGAAGGGTTTTGATATGATCTTTCCATCATGTCATGAAAATTTTAGGTTAGACCTGGATTACTATGAGCATTGTTGAAGGTGGATTTTTTAGCTTAATGGAGGTTTAACACGATATTATGGGGCATTGAATCGATTTTCAAGAATTATTGCCTTGAGTTATTATTCTGTTTTAAGTTGTGCTGTTTATTAGGAGTTTTTAATTGATATACTGTATCCTAATTTGGTGTTATGTTCGCATATCTTCAGTTTTACTATGGCATTGTTGTTCATCACTTGCAGATCTTTGCCCTTGATTGATGGTCTAATACTGTAGTTACAATATTAATTACTTTTTGGCCTTTAAAATTCA

Functional annotation

Database	accession number	e-value	annotation
nr	ABY61029.1	3.8e-69	zinc finger-homeodomain protein 1
Swissprot	Q9M9S0.1	9.8e-54	Protein FLORAL TRANSITION AT THE MERISTEM 2
trEMBL	B0LK18	2.8e-69	Zinc finger-homeodomain protein 1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G02540.1	54.25	2e-60	229	ATHB21;HB21;ZFHD4;ZHD3	homeobox protein 21

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G08713	AT2G02540.1	212	73	4	40	229	76	285	54.25	2e-60	229
AfisC2G08713	AT1G14440.2	249	92	8	11	237	54	290	49.40	3e-58	221
AfisC2G08713	AT1G14440.1	249	92	8	11	237	54	290	49.40	3e-58	221

Ortholog group

Species	Genes
Allium cepa	g469603.t1
Allium fistulosum	AfisC2G08713
Allium sativum	Asa6G00871.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF04770.9	ZF-HD_dimer	Family	49	101	104.5	2.4e-30

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0009414	P	response to water deprivation
GO:0009737	P	response to abscisic acid
GO:0009793	P	embryo development ending in seed dormancy
GO:0010371	P	regulation of gibberellin biosynthetic process
GO:0010431	P	seed maturation
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0019760	P	glucosinolate metabolic process
GO:0042803	F	protein homodimerization activity
GO:0043565	F	sequence-specific DNA binding
GO:0048574	P	long-day photoperiodism, flowering

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network