result

Gene information

Detail information of AfisC2G08787

Location

Gene	Chr	Start	End	Strand
AfisC2G08787	chr2	1449276926	1449279801	+

Sequences

CDS

Protein

Gene

>AfisC2G08787
AGCTTTATTGTCATCATCCTCATCCTCTTCTATACATTTTTAGATATCTTGATTTGAAAAATAAGAAAGAAAATGAAGATACAGTGCGACGCGTGTGAGAAAGCAGCAGCAGTAGTGATATGCTGTGCAGATGAGGCTGCACTATGTGAGAAATGTGACGTTCAGATTCATGCTGCTAACAAATTAGCAAGCAAGCATCAAAGACTTCCTCTTCATACTCTTTCCAACAAGCTTCCTTTTTGTGATATTTGCCAAGTAACTTCTTTTACCTCATTTCTTCATCATTTTTTATTGTTGTTGTAAATTCACCCACACTAGTTCAGTGTTGTAATCCAAGAAATCATCTGCTTTGTAACAAATTTTTGTACCAATACAATACACCACAGATCTAATATTTGTGTGTTATATATATGTATACACGAGTGTTATGACACGAGTTTCGCGCGTGTACTGTTTTTCTTATAAATTGCATATGTTTGAATCAATCAAAAATAATGATTTTCAAACATCAGTAAAAAATAACGATTTTTTTATTTTCAAATGATATTAAGATTTGTGTATTTATAAAGAAGTATTTTGAATTGGTAAAGTAAGTTTAATTTTAGATCCTACTTTTAGAAGCGTTTTAAATTTGTAAAGCATGTTTGATTGTTAGATCCTACTTTTAGGGACGTTTGAATTTGTAAAAGAAATTTAATTTGGATCTTATAACTATTATTATATATATATACACACACACATATTATAGACCGATGGTTCATTTTTGTCGACTGTTATTATGCCATCTCATCTTTTATATGAATCGTTAGAAACTTGGAAAACCAATCGAAACTTGGTTTGCATCAATCTTTTACTGAATTATATCAGATATCATGATGATTCTCATGTATCATTTTAAAAGCTTCCATCCAGTAAAATGTGTGGCAAGTTATAAAAAAAACTGCACTACACAGCCATTTACTTCTTTCGTAACCATGTAAGGCTATTAGCATATTCAGTGTACCTACTCTTAGTTTTGCATAATCACTGAATCAAATATATAATACAGATCCAGATATTCAAAACTGCTATGTTTAATGTTATGAATGTAACATTTGATTAGCTAGATAATATGATAGTTCACATACCTCTCCTCCTAATATTATAAGGTGTAAAAATGACCAATGTAATATTTCAGATGAACATATTGACCTACTCATGGATGTGCCATGGAAACATGTTGAAGAAAAAGTATAATCAACCATATACAACGATCACCTCTATAATTATATATTTTGTATTATAAGTAATGTAATTAAGCATTGTTAGGTTTTAAATTGTACATTGGTTTCCGCAATTTGTCTTTAGTCGTACGTCGTCTAAATATTTTTATGAGATGGGGCCTATAACAATTAATTTCTTTGGCTATTAGTTTAATTTGTTGCGATCATAACCCATGATATGTATGCTGCCACGTTACATTTTTTTTTTCTTTTCAAATCAAACCTATAATTTTCTACTCGGAGGAATTCACAGTTGCTGTCTGCATTACCCTCCTAGTCTTTGTATCTTAGGATAAGCATTTACTTGGACCAAACAACATACTCTTTCAAGCGACGACCAATAACCTTTTAAAGATAGCGTCGACTTACTATGCACCTCAAAACCTTTTTTTCCTAATCATCTTACTGTATAAATTTCTAACAGGCATCAGTTTTAAAAGTAAGTGACACAAACATGTACATTAGAAGATGAAATGCATCGGGATAGGATTATCCTGACTTTTCAGATATAAAAGTGTTATAACACAGATTTCTTATCGAAACACTTAGGTTATGACCCTTCAGAGATAGTTTCTCTTTTAAAATTTTCAGTTATTTCATATATAGGACAAGGCAGCATTCATATTCTGCGTAGAAGACAGAGCTTTGTTTTGTCGTGACTGCGACGAAGCTATCCACGTTGCTGGAAGTCTTTCAGGCAACCACCAACGCTACTTAGCTACTGGCATCCGTGTCGGTTTGAGATCAATATGCAGCAAAGGTTCTGAAAAGATCCAGTCTGAACCCCCTAACCAGAATTTCGCACTCTTAGGCCACAAGATTTCCCTCCCTCAAGAACAAGTGTCTCCTTTCATGCCTTCTGCTTGGGCTGTTGATGAATTCCTCCAGCTCTCTGATTATGAATCTAACGATAAGGTACTAAAATACTCTTTCTCGAGTACCAAGTTGAGTGGTTATATATGTTAGAAGCATGTATGCATGCATCCCTTCATTTTTGTACACTGTACAGTGACTACAAAAAAGTATAAAGCATGACTGTGTATAATTAAGATGATATTACTCACATATTACTTACCCATCGTTTGTTTGTGTACTGCAGTTGAATAAAGGATCTCAAGCTGGATTTGGGGAGCTAGATTGGTTTACAGACATTGGTCTTTTCCAAGAAGAATTAGGTCCCAAAACAACAATGCAAGCAGCTGAAGTTCCAGAAATGCCAAGCCCACAAACAAGCAATGCAGCATATTTCAGAAACAGCAACAACAAATACAGCAACAGCATGATGTCTTACAACAGCAAAAGCATGCAGTACAACAAAAGGTCAAGGGTTGAGGTTTCTGATGAAGAGGAGTATTTCACGGTTCCTGATCTTGGGTAAAAGGTGAAGCACTATGTGTTTATGTTATTATATGTGTGCTATTGTATTCCTACATTTATCCATGTATCTATTTGCTAGTAGATATGTGCATAAATGAATGGATAAATCTAGATACATATTTTTTTGCAAATGAAGTTCTGCAAACTAGTATCGCCTGTGTAATTTGTTACTTTCTTGAATATGGTTAATGTTTGGCATGATAGTGGAGTTTATATTGTAGATTAATTTGGTAGCTG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010930223.1	6.1e-86	B-box zinc finger protein 24
Swissprot	Q96288.1	3.1e-63	Salt tolerance protein
trEMBL	A0A6I9RY52	4.4e-86	B-box zinc finger protein 24

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G06040.1	54.02	1e-66	249	BBX24;STO	B-box zinc finger family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G08787	AT1G06040.1	261	102	7	1	256	1	248	54.02	1e-66	249
AfisC2G08787	AT2G31380.1	260	99	9	1	256	1	238	51.92	6e-62	234
AfisC2G08787	AT1G06040.2	169	54	2	1	165	1	169	65.68	4e-54	208

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00643.21	zf-B_box	Domain	53	95	29.4	6e-07

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003712	F	transcription cofactor activity
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007623	P	circadian rhythm
GO:0008270	F	zinc ion binding
GO:0042802	F	identical protein binding
GO:0009651	P	response to salt stress
GO:0009741	P	response to brassinosteroid
GO:0009909	P	regulation of flower development
GO:0010100	P	negative regulation of photomorphogenesis
GO:0043565	F	sequence-specific DNA binding
GO:0048573	P	photoperiodism, flowering
GO:0080167	P	response to karrikin
GO:0090351	P	seedling development
GO:1902448	P	positive regulation of shade avoidance

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network