result

Gene information

Detail information of AfisC2G08847

Location

Gene	Chr	Start	End	Strand
AfisC2G08847	chr2	1460055813	1460057526	+

Sequences

CDS

>AfisC2G08847
ATGATTATGAAGGTCCGCTACTTAACATCGGTCTCAAATGATCCCAAAATTAACAAATTTCCTACGAGTCGGGTGGTGTTTGCAATTGTAATTGGAGTTTCAGGGCTTATTTTCTCTTTCATGTTGTATTTCTGCATCAGAAGGACATGCAGGAAAAAACACAAGGATAAGTTCTTCATAAAAGAGGTAAGTTTGAGAAGATTCAGCTTTGGTGAAATAGAAAAGGCCACCAAATGCTTCAGCAAAGAAAGCATGATTGGGTCAGGTGCATTTGGAAGTGTTTATAAGGGAATTTTGGATGGTGAAGTTCTTGCAATCAAGAGAGAGCATGTAGATTCATACGAGAATCATAAGGAGTTCAAAAATGAGGTGGAGCTTCTGTGGAGAGTGAAGCATCCGAACCTTGTGGCTCTGGTTGGATTTTGCCAGGAGGCGGATCATAGGATACTGGTTTATGAGTACATTCCAGATGGAACACTACTAGAGTATATGGTTGGTAATAAGAGGAAAATTTTAACCTGGCAGCAACGGGTAAATATAGCTATTGGAGCTGCCAAAGGCATAGCTCATCTACATGAAAGTGTGGATCCAAGCATAATCCACAGAGATATTAAACCTAGTAACATTCTGATTGGGGAAGGGTTTGAAGCTAAAGTGTCGGATTTTGGGTTAGTGAGGTCAGGACCCACAGGCGAAGAATCGCACGTAAGCAGTCAAGTAAAAGGAACTCCTGGCTACATGGACCCTGCTTATTGTTCTAGCTACCATTTGTCCACTTTTAGCGATGTCTATAGTTACGGAGTCATTCTTCTCCAGCTCATCTCCTCCAGACCAGCCATTGATGCCAATAGACCAAAGCGGTACCACCATATCATTGATTGGGCAAGGTCAAGTTTGGAAAATGGCATAGTGCAAGAGATACTTGATGCTAACTTACTATTAGAAGCATGCAACATGGGTATGATGCTAAAGATGGGGATATTAGCCCTAAAATGTGTGGCGGAGAATCCTAAGAATAGGCCTACGATGCTCCAAGTTGTTCAAGAGTTGGAAGATGCAATGAAGTACTATGCAATTCCCACAGCAAACAAGATAACGAAATCAATGGCACTAGATGAATCTATGAGCTTTAGCGTATCAGGAGTTGGACTGGAGAAATTCCATATTGAGACAAACGATATTTCAATAGAGAGTGTGGCAATGAAGTGCATTGATATAACTGATATTGACTACAGTCATAGTATTGATGTTGCTCATTTGAAGAACAGTTGGTAG

Protein

Gene

>AfisC2G08847
ATGATTATGAAGGTCCGCTACTTAACATCGGTCTCAAATGATCCCAAAATTAACAAATTTCCTACGAGTCGGGTGGTGTTTGCAATTGTAATTGGAGTTTCAGGGCTTATTTTCTCTTTCATGTTGTATTTCTGCATCAGAAGGACATGCAGGAAAAAACACAAGGATAAGTTCTTCATAAAAGGTGATAGTTCAGTAAATTATTTACATTTTTTAAAACTTCAAAAGCCATTGATTTGGATTTATTTTGATTTCCACAGAGGTAAGTTTGAGAAGATTCAGCTTTGGTGAAATAGAAAAGGCCACCAAATGCTTCAGCAAAGAAAGCATGATTGGGTCAGGTGCATTTGGAAGTGTTTATAAGGGAATTTTGGATGGTGAAGTTCTTGCAATCAAGAGAGAGCATGTAGATTCATACGAGAATCATAAGGAGTTCAAAAATGGTATAATCATTTTTAGCAATATTTACAACTAATTTTAGGTAGGAAAAAAACAAGTGTATTAAGTTATAGAAGCAAGTTTTTGATGCAGAGGTGGAGCTTCTGTGGAGAGTGAAGCATCCGAACCTTGTGGCTCTGGTTGGATTTTGCCAGGAGGCGGGTATGAATAACACATACCTCTATCCATTTACATTACTATCATATCCTAAGCTTTGTTCTAGAATTCGCTAAATTTGACACTGCAGATCATAGGATACTGGTTTATGAGTACATTCCAGATGGAACACTACTAGAGTATATGGTTGGTAATAAGAGGAAAATTTTAACCTGGCAGCAACGGGTAAATATAGCTATTGGAGCTGCCAAAGGTAAATCATACAATATCAATAACCCTTGAACTTAAATAAGTCGCAAGTTAGTTGTACTATAGAGGCGGGCTCGTTAATTACTAATGGTGCAGGCATAGCTCATCTACATGAAAGTGTGGATCCAAGCATAATCCACAGAGATATTAAACCTAGTAACATTCTGATTGGGGAAGGGTTTGAAGCTAAAGTGTCGGATTTTGGGTTAGTGAGGTCAGGACCCACAGGCGAAGAATCGCACGTAAGCAGTCAAGTAAAAGGAACTCCTGGCTACATGGACCCTGCTTATTGTTCTAGCTACCATTTGTCCACTTTTAGCGATGTCTATAGTTACGGAGTCATTCTTCTCCAGCTCATCTCCTCCAGACCAGCCATTGATGCCAATAGACCAAAGCGGTACCACCATATCATTGATTGGGTATGTTTGAAACTTATATGGTTTCAGCAATATGAATAAACATCACACCTATATATAATTCTCATATAAAAAAAATTATATTAAATCTTTCTCTTAAGGCAAGGTCAAGTTTGGAAAATGGCATAGTGCAAGAGATACTTGATGCTAACTTACTATTAGAAGCATGCAACATGGGTATGATGCTAAAGATGGGGATATTAGCCCTAAAATGTGTGGCGGAGAATCCTAAGAATAGGCCTACGATGCTCCAAGTTGTTCAAGAGTTGGAAGATGCAATGAAGTACTATGCAATTCCCACAGCAAACAAGATAACGAAATCAATGGCACTAGATGAATCTATGAGCTTTAGCGTATCAGGAGTTGGACTGGAGAAATTCCATATTGAGACAAACGATATTTCAATAGAGAGTGTGGCAATGAAGTGCATTGATATAACTGATATTGACTACAGTCATAGTATTGATGTTGCTCATTTGAAGAACAGTTGGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020262964.1	1.9e-148	probable LRR receptor-like serine/threonine-protein kinase At1g53440
Swissprot	P43293.2	2.3e-66	PBS1-like protein 11
trEMBL	A0A5P1F848	6.4e-143	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G02290.1	41.69	5e-69	258	NAK	Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G08847	AT5G02290.2	307	163	5	60	352	48	352	41.69	5e-69	258
AfisC2G08847	AT5G02290.1	307	163	5	60	352	48	352	41.69	5e-69	258
AfisC2G08847	AT2G19230.1	347	197	4	11	354	503	843	40.63	6e-68	254

Ortholog group

Species	Genes
Allium cepa	g136954.t1
Allium fistulosum	AfisC2G08847
Allium sativum	Asa6G00665.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	81	348	154.5	3.1e-45

Gene Ontology

Accession	Ontology	Name
GO:0042742	P	defense response to bacterium
GO:0050832	P	defense response to fungus
GO:0004674	F	protein serine/threonine kinase activity
GO:0005730	C	nucleolus
GO:0009506	C	plasmodesma
GO:0009536	C	plastid
GO:0009742	P	brassinosteroid mediated signaling pathway
GO:0009791	P	post-embryonic development
GO:0009860	P	pollen tube growth
GO:0016324	C	apical plasma membrane
GO:0019901	F	protein kinase binding
GO:0046777	P	protein autophosphorylation
GO:0051510	P	regulation of unidimensional cell growth
GO:0052033	P	pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response
GO:0090404	C	pollen tube tip

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network