Detail information of AfisC2G09027


Location
GeneChrStartEndStrand
AfisC2G09027chr214969323381496951321+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020260816.15.9e-243lysine-specific demethylase JMJ706-like isoform X1
SwissprotQ336N8.14.7e-205Protein JUMONJI 706
trEMBLA0A5P1F0824.3e-243JmjC domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT5G46910.150.070.0 682Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein

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Ortholog group
SpeciesGenes
Allium cepag56166.t1
Allium fistulosumAfisC2G09027
Allium sativumAsa6G00496.1
Arabidopsis thalianaAT5G46910.1
Oryza sativaLOC_Os10g42690.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF02375.14JmjNFamily10313549.82.2e-13
PF02373.19JmjCDomain279402135.41e-39
PF02928.13zf-C5HC2Domain50055029.85.2e-07

Gene Ontology
AccessionOntologyName
GO:0051276Pchromosome organization
GO:0000792Cheterochromatin
GO:0003677FDNA binding
GO:0003712Ftranscription cofactor activity
GO:0046872Fmetal ion binding
GO:0005654Cnucleoplasm
GO:0016491Foxidoreductase activity
GO:0007276Pgamete generation
GO:0007623Pcircadian rhythm
GO:0009719Presponse to endogenous stimulus
GO:0010033Presponse to organic substance
GO:0045892Pnegative regulation of transcription, DNA-templated
GO:0016573Phistone acetylation
GO:0016740Ftransferase activity
GO:0030154Pcell differentiation
GO:0031057Pnegative regulation of histone modification
GO:0032453Fhistone demethylase activity (H3-K4 specific)
GO:0032454Fhistone demethylase activity (H3-K9 specific)
GO:0034720Phistone H3-K4 demethylation
GO:0045815Ppositive regulation of gene expression, epigenetic
GO:0048439Pflower morphogenesis
GO:0048522Ppositive regulation of cellular process
GO:0048581Pnegative regulation of post-embryonic development
GO:0048585Pnegative regulation of response to stimulus
GO:0051716Pcellular response to stimulus
GO:0060560Pdevelopmental growth involved in morphogenesis
GO:0060603Pmammary gland duct morphogenesis
GO:1902494Ccatalytic complex
GO:2000028Pregulation of photoperiodism, flowering
GO:2000242Pnegative regulation of reproductive process

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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