result

Gene information

Detail information of AfisC2G09135

Location

Gene	Chr	Start	End	Strand
AfisC2G09135	chr2	1516211717	1516213226	+

Sequences

CDS

Protein

Gene

>AfisC2G09135
TTGCACTAATGGTTGTCTTTGTGATTTAACCCTTAACGTTTTTTACCGACATCTTAATGCTTTGACCAGATAAACCAAGTTAACTTGGGGCACATATTATAATTATTATATGTTCATTTCATAAGACATGGTCATTGTGCATGCATGTTGCATATATTATTATAAATACTATTACCACTGAGTGGGATATGTGCTATAATAATGAGTGACCAATTAATTAGACAGAACTAACTATAGCATTCATATAATTTTTCCAAAACATGGGTCATCACTGCTGTAGTAAACAGAAAGTTAAACGTGGGCTGTGGTCACCCGAGGAAGATGAGAAGCTGATGAATTACATTACTACCCATGGCCATGGCTGCTGGAGCTCTGTCCCTAAACTTGCAGGTACTCACAATCTCCCCCTTCATAATTTTCTTCAATCAATTCCTCAGCTTATACAAATTTAATAACAGGGCTGCAAAGATGTGGAAAGAGTTGCAGATTAAGATGGATCAACTACCTAAGACCAGACCTCAAAAGAGGAACGTTTTCTGCCAATGAAGAAAGAATCATAATAGATGTTCACAGAATTCTTGGCAACAGGTATTTATTTCATCTTTTCTTGAATATGAGTCAGACTTATGATAAGACTCTTGTCACTGTTAATATATTGAATGATTGATTATATATTCAGGTGGGCGCAAATAGCAAAACATTTGCCAGGAAGAACAGACAACGAGGTGAAAAACTTCTGGAACTCATGCATAAAGAAGAAGCTGATAGCTCAAGGCCTGGATCCCAAAACACATAACTTGATGCCTGCTGCTTCAAGGGCAGCAGCAGCTGGAAACACTTACACTGTTAATGGCAGTGCGAAATTATCAACTCAGTTTCAACAGCCGCAGAATTCTAATGTGGTTCCTTTTACTATTAGCCCCCCATTCGGCACCTTGCCCACTTTGAACAATAGCAATGATAACGGTGCACAGGTTTTGATCGAGTATCAAGAAAACGATGTTATGATGAGCTTCAAGGAGCAGGATCAATGCGGTTTGATGGATTACTCGGAGTTCGGAGTGGGCGATGCTTGCAATATGTGGGGTGGGAATAGCAATAACAATGATGATGGTGGTGTTGTTAATGGCGTTGACAACTTGGATGTGTTGAGGCAAAATGCACAAGAATTGGAAGCTGTACATAATGAGATGAATGAAGATATGTCGTATATGAACAGCGCGGCGTTTGACCTTGACATGATGGAGTCTACATTGAATATGTCTTGTGGGATTTTCAGCAATATTGGGACATCAATGGAACAATTGCAATGGGATTGTTGATTATTTGTTTAGAGTCTGGTATATGTCCTTTCTTATTTATGATGATGATGATTCGCTATTTCTAATCCTTTTTTTCTTTTTCTTTTTTCCCCTTTTGAGAATGTTGTAGCAGTGTTGATAAGAAATTAATTTATTGGTTTTGATGTTTATGTGTATTATGGTTTATAAATAAAACAGTGGGTTATTAT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020256664.1	1.9e-91	myb-related protein 330-like
Swissprot	Q8LPH6.1	1.9e-59	Myb-related protein 86
trEMBL	A0A199W134	9.0e-83	Transcription factor MYB86

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G12720.1	84.96	7e-69	257	ATMYB67;ATY53;MYB67;MYB67	myb domain protein 67

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G09135	AT3G12720.1	133	20	0	1	133	12	144	84.96	7e-69	257
AfisC2G09135	AT5G26660.1	126	26	1	1	125	1	126	78.57	7e-60	227
AfisC2G09135	AT1G57560.1	153	50	1	3	155	4	153	65.36	7e-60	227

Ortholog group

Species	Genes
Allium cepa	g250497.t1
Allium fistulosum	AfisC2G09135
Allium sativum	Asa6G00585.1
Arabidopsis thaliana	AT3G12720.1
Oryza sativa	LOC_Os07g31470.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	13	60	57.2	1.2e-15
PF00249.28	Myb_DNA-binding	Domain	66	109	51.7	6.4e-14

Gene Ontology

Accession	Ontology	Name
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0001944	P	vasculature development
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009800	P	cinnamic acid biosynthetic process
GO:0009901	P	anther dehiscence
GO:0009909	P	regulation of flower development
GO:0010089	P	xylem development
GO:0010091	P	trichome branching
GO:0010119	P	regulation of stomatal movement
GO:0010214	P	seed coat development
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0043565	F	sequence-specific DNA binding
GO:0048364	P	root development
GO:1900384	P	regulation of flavonol biosynthetic process
GO:2000652	P	regulation of secondary cell wall biogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network