result

Gene information

Detail information of AfisC2G09266

Location

Gene	Chr	Start	End	Strand
AfisC2G09266	chr2	1540711211	1540713869	+

Sequences

CDS

>AfisC2G09266
ATGAAGGATGAGCTCAAAGGAGCAACAACCACCCACTCCTCAATCCCAAATCCAAATCTCTTCCAATACTCACCACCACAACCACCGCTTGGGCCACTCACCGGCCTCCACCTAGCAACCACCGTAGATGCCTCGTGCATAGAAAAGCTCCTTCTGCACTGTGGCGCCGCCTTAGAGAACAGTGACGCGACCCACGCCCAGCAGGTCATGTGGGTCCTCAACAACGTTGCCTCGTGCACTGGAGACCCCAACCAAAGGCTCGCCTCCTGGTTCCTCAAGGCCCTCCTCACCCGCCTATGCCCCACCCCTAGGCTAACCCGAACATCCTCATTCAATCCCATGACCGTTACAGATTTAGCAAGCTACATCGATCTAACCCCATGGCACAGGTTCGGATTCTCCGCGTCCAACGGCGCCATCCTCAAGGCCGTGCAGGGTGTCTCCAAGATCCACATCCTCGATTTCGGCATCATGCATTGCATGCAGTGGCCCACTCTGATAGATTCCCTAGCCAAGAGGCCGGAAGGCCCACCCTTGATGCTTAGGATTACAATCCCAACGGAACGGCCCCCCGTCCCACCATTACTTACTGTACCCGTAGATGTAATAGGACACCGGCTAACCAATTTTGCAAGATCGAGGAATCTACCGTTCGAGCTGCATGTGGTGAACAAAGAATTCAAATGCGCGCAGTTCAATCCTTTGTCATTCGATCTCCACGACGATGAAACGATCGTCGTGAACTGCCAGAGTTGGTTGAGGTATCTATCGACCAAGGACGAGTTCCTGGACTCGATTCGGGAGCTGAATCCTACGATCGTGACTATTACTGATGATGATGCTGATTTGGATTCACCTAATTTGACAACGAGAATCATGGCATGTTTTAACTACCTGTGGATTCCTTTCGATGCGCTTGAGACATTTTTACCTAAAGACAGTGCACAGAGAGCGGAGTATGAGGCGGATGTGGGACAGAAGATTGAGAATGTGATTGGGTTTGAAGGGGAGGAGAGGATAGAGAGGTCGGAGTCGGGGGCGAGGATAGTGCAGAAAATGAAGAGGGCTAATTTTGTAAATGTGCCTTTCGATGAGGAGGTGGTGAAGGAAGTGAAAGGGTTGCTGGATGAGCATGCGAGTGGGTGGGGGATGAAGAGGGATGAGGAAATGATGGTGCTGACTTGGAAAGGCCATAGCTCTGTGTTTACTACTGCATGGGCCCCTTATGGATTCAATGAGTAG

Protein

Gene

>AfisC2G09266
TCCAATACCAATCTTCCTGCTTCTTACACCCCACCATCAAACACACCCAAAAAGAATTTTAAAGTGAAAAAGAATGCACGTGAACTGATCACCACACATTTCAACAAGAGAAAAAAAAAACACACACACACAAAATCAAAAACACAATAATAACTTTCAAATAATGAAGGATGAGCTCAAAGGAGCAACAACCACCCACTCCTCAATCCCAAATCCAAATCTCTTCCAATACTCACCACCACAACCACCGCTTGGGCCACTCACCGGCCTCCACCTAGCAACCACCGTAGATGCCTCGTGCATAGAAAAGCTCCTTCTGCACTGTGGCGCCGCCTTAGAGAACAGTGACGCGACCCACGCCCAGCAGGTCATGTGGGTCCTCAACAACGTTGCCTCGTGCACTGGAGACCCCAACCAAAGGCTCGCCTCCTGGTTCCTCAAGGCCCTCCTCACCCGCCTATGCCCCACCCCTAGGCTAACCCGAACATCCTCATTCAATCCCATGACCGTTACAGATTTAGCAAGCTACATCGATCTAACCCCATGGCACAGGTTCGGATTCTCCGCGTCCAACGGCGCCATCCTCAAGGCCGTGCAGGGTGTCTCCAAGATCCACATCCTCGATTTCGGCATCATGCATTGCATGCAGTGGCCCACTCTGATAGATTCCCTAGCCAAGAGGCCGGAAGGCCCACCCTTGATGCTTAGGATTACAATCCCAACGGAACGGCCCCCCGTCCCACCATTACTTACTGTACCCGTAGATGTAATAGGACACCGGCTAACCAATTTTGCAAGATCGAGGAATCTACCGTTCGAGCTGCATGTGGTGAACAAAGAATTCAAATGCGCGCAGTTCAATCCTTTGTCATTCGATCTCCACGACGATGAAACGATCGTCGTGAACTGCCAGAGTTGGTTGAGGTATCTATCGACCAAGGACGAGTTCCTGGACTCGATTCGGGAGCTGAATCCTACGATCGTGACTATTACTGATGATGATGCTGATTTGGATTCACCTAATTTGACAACGAGAATCATGGCATGTTTTAACTACCTGTGGATTCCTTTCGATGCGCTTGAGACATTTTTACCTAAAGACAGTGCACAGAGAGCGGAGTATGAGGCGGATGTGGGACAGAAGATTGAGAATGTGATTGGGTTTGAAGGGGAGGAGAGGATAGAGAGGTCGGAGTCGGGGGCGAGGATAGTGCAGAAAATGAAGAGGGCTAATTTTGTAAATGTGCCTTTCGATGAGGAGGTGGTGAAGGAAGTGAAAGGGTTGCTGGATGAGCATGCGAGTGGGTGGGGGATGAAGAGGGATGAGGAAATGATGGTGCTGACTTGGAAAGGCCATAGCTCTGTGTTTACTACTGCATGGGCCCCTTATGGATTCAATGAGTAGGATGATTTTGTTGGGATTTGATGGAATGTGATAACTTTTGTTGGAATGTGATATTTGTTTTAGACATCTTATATGATGGGAAAGATTAGATTATTAACACATCATGAATGTCAGTGGAAGATGGAATTATCACGAGTCTATTTTGGTAACAACCAAAGAAAATGCCTATAGAACTAAACTGACAAAACTTATGGTAGAACAACCAAATCCTTGATTAAACTTTTGATTTGGATTGCGGATATAAAGATCTTAAATGTCCAGATTTTTTAAGTACCATTGCACTACCAGAGTTGTGGGTGGAAGTCTTTTGAAGAATGCATATAGTTTGTCTTCATGGATAAAGGGATTTTTTTTTCTATGGTTAGTATTCGTTTGTTTGCATCGCACATAGGATTCTACAAGTCAGGAGATCACTGCATATCCAACATTCATTGACATCTTACTGATTAGCACATCCTCAAGGTCCCAGGTTTGTACAATTGCACTTCAGTAATTCCACTTTTGAAGCTACCTCTTTCCCTAGATAACTCTTTTAAGTTTTTTATTATATTCTACGATAATTTTATTTCAAGAATAGTTTTTAATTTAATGTATTGAAGTGAAATGTGCAAGCTATTCAAAATGCTTGATTATATTATCTCTGCACTTTTAAGGTTCAGTAAAATATCAATCCCTCTTGGATAATATTTAGCGGAAGTTAATCGCATTCTTGTTTCTAGAAAATCTATTTTGATAAATTATAATCATAATCAATGTTTCTTTCTTTCGAACTCCTTAAATTCACACACTTTTAAAAACACATGTTTCCTCCTTCCACGTCCCATGCAATTGCCGAATACCCTCCTGCATGATGATACCTCTTCATTTCACTACTTCTTATCTTTATTCCATAATACCAAATCCCTAAATCTCAAATCTTTCTTTTACACAAACAGATTCAACTCGAATTCCTAATATACATGCACCATTTCTTTCCTTTTTTGCAAGGTAATGATCCCCTTCCAATTTTCATTCAACACAATTAAACAGGTGCGATGCTTATTTTCCTCAACAGCTACATCACACAAAAAATGCTCGTTACAACTCACACTCTTACATCTCACCACATAACACTCAGATACATTTTCCACAACAATTGCACAAAGCATATTGCCCGATACACCACAAATCATTCCTTTATGTAAATGCGAGTAGGGGGAAACTATTGGAATTAATCATCCCAAAACATGGGAGAAACCTTGTAAAATCAGCTAT

Functional annotation

Database	accession number	e-value	annotation
nr	OVA13172.1	2.7e-144	Transcription factor GRAS
Swissprot	Q9SN22.1	2.3e-92	GRAS family protein 18
trEMBL	A0A8B7D4Q9	2.7e-146	scarecrow-like protein 32

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G49950.1	43.90	6e-96	347		GRAS family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G09266	AT3G49950.1	426	193	10	11	408	2	409	43.90	6e-96	347
AfisC2G09266	AT4G37650.1	395	251	8	41	408	137	530	29.37	8e-49	191
AfisC2G09266	AT5G48150.2	382	240	8	51	406	123	489	26.44	8e-38	154

Ortholog group

Species	Genes
Allium cepa	g375832.t1
Allium fistulosum	AfisC2G09266
Allium sativum	Asa6G00303.1
Arabidopsis thaliana
Oryza sativa	LOC_Os05g42130.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	48	406	287.6	1.2e-85

Gene Ontology

Accession	Ontology	Name
GO:0005488	F	binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009739	P	response to gibberellin
GO:0009755	P	hormone-mediated signaling pathway
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044763	P	single-organism cellular process
GO:0048367	P	shoot system development
GO:0048523	P	negative regulation of cellular process
GO:0065008	P	regulation of biological quality
GO:0071229	P	cellular response to acid chemical
GO:1901701	P	cellular response to oxygen-containing compound

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network