result

Gene information

Detail information of AfisC2G09275

Location

Gene	Chr	Start	End	Strand
AfisC2G09275	chr2	1542177407	1542179929	+

Sequences

CDS

>AfisC2G09275
ATGGAGAGCACGGACTCATCCACAGGCCCACCAGCACCGCCACAGCCACATCCACAGTTGCAGCCTGCACAGCCGCAACTGCCGCCTGGATTCCGGTTCCATCCGACCGATGAAGAGCTGGTAGTCCACTATCTGAAAAGAAAAGCCGCCTCTGTCCCTCTTCCTGTGTCCATCATCGCTGAGGTCGATCTGTACAAGTTCGACCCCTGGGAACTTCCAGGCAAGGCAAGCTTTGGAGAGCAGGAGTGGTACTTCTTCAGTCCAAGGGACAGGAAGTACCCTAACGGAGCAAGGCCCAACCGAGCAGCAACATCAGGATATTGGAAGGCGACAGGGACGGATAAGCCAATAATGAGCTCCGTAGGTGATTCTGGAGGCTGTTCGGCATCTGCTGGGCAGATGAAGAAGGTTGGTGTGAAGAAGGCCCTGGTTTTCTATGGAGGGAAGCCTCCGAAAGGGATCAAGACTAACTGGATCATGCATGAATATCGACTTGTAGACGGGTCGGGTTCTGCTGCTGTTGGTACACGCCCGCCGCATCATCATGGGAACAACAAAAAGGCATCTCTCAGGTTGGATGATTGGGTGCTATGTCGAATATACAAGAAAAACAACAGTGGCAGTGGAGGGGGCATGAACAACAGCATGAGTAATAACACACAGAGGTTGCTGATACAAGATTCAAATAACATGGATCACAGCATAAGGCAGATGCAAGTACAGCAGCAGAGCACCGGCAACTACACGGCTCTCCTAGAAAACGACGAAACCTTCTTAGAAGGCTTCCTCACAAACAACAACAGCAGCAACAACACCGCTAATCACACGAATAATCCCAATAACGACACGGTGATACACAGCTCAAGCACCAACTCTATCACGAAGCGGGCACTGCAGTCTCCGTACTGGTGCATTGACGATACTGCCCCTGGTAAACGGGTTTTCCAGACGTACAGCAACAACAACAGCAACAACAATAGTGGAAACAACAGCAGCAGCAACTATAACACTAATAACAATGAGGGTGCAAATACCATAGAGACGTTGCTTGGGCAAAGCCATATTCCTGCAGATAATTATAGCAACGTTCACAGCAGTTTGTTTCTTGGTAGCACTGCTGTCTTTCGCCAACCTGGTAGCCAACCTGGGATGAAGTACTGGAATTCTTGA

Protein

Gene

>AfisC2G09275
CCCATCATCACTTTCAGCAGCTGTTGCCTCTTCCATTTTTTTCCTCCTTACACTATATATACAATACAAACACATGATAATCAACTTCAACCATTAATATCATAAACAATAAAAGGGACCAGCATTTGAAAAGAAGCATAGATGGAGAGCACGGACTCATCCACAGGCCCACCAGCACCGCCACAGCCACATCCACAGTTGCAGCCTGCACAGCCGCAACTGCCGCCTGGATTCCGGTTCCATCCGACCGATGAAGAGCTGGTAGTCCACTATCTGAAAAGAAAAGCCGCCTCTGTCCCTCTTCCTGTGTCCATCATCGCTGAGGTCGATCTGTACAAGTTCGACCCCTGGGAACTTCCAGGTAAGTGAATATTTGTTTATGATATACTCATAAAAATGATGGAGGTGTAAGCTCACTATTCTGTTTTAGGCAAGGCAAGCTTTGGAGAGCAGGAGTGGTACTTCTTCAGTCCAAGGGACAGGAAGTACCCTAACGGAGCAAGGCCCAACCGAGCAGCAACATCAGGATATTGGAAGGCGACAGGGACGGATAAGCCAATAATGAGCTCCGTAGGTGATTCTGGAGGCTGTTCGGCATCTGCTGGGCAGATGAAGAAGGTTGGTGTGAAGAAGGCCCTGGTTTTCTATGGAGGGAAGCCTCCGAAAGGGATCAAGACTAACTGGATCATGCATGAATATCGACTTGTAGACGGGTCGGGTTCTGCTGCTGTTGGTACACGCCCGCCGCATCATCATGGGAACAACAAAAAGGCATCTCTCAGGGTACGTTATCATTGTGGAAATTAGATTATTGGCTTTGGTTAAAAACTTAAGTATTGTATTCAAGCTCATTAGATCTTCTATATCCAAATTCTATGTTCCATAAATAATGAATCGCTTCCATTCATTTTATATTCAATAAACAGCTAATTTAGAAATTTGAGGTTAGAGATTTAAAACTTTACACCCTGGCAGGAACATAGATTACGTCATTGACATCAAACGCTATTTAATTTCAAAAAATTTGTAACTCCACATGTTAGAGCAATAAACTAGAAAAAAATAAGGAAAAGAATCAATAAAAAATGATAGGTGATTTTAGCTCAAATTTTGGTTACTTTTTGAGTCATTACTTCATTTATTTTTGTACTTTAATAAAATGAACTAGATTTATGAGAGCCTTTGAACTTTTTTGTAATTAAAGAAAACCAAGGTTCATTTGTAAATTTTAATAAAATATGTACATGATAAACATATATTTCAAGAATTTGTTACAGGCTGTTGATTTTGAAGTTCGAACTTGCGACCTGTTTCGCAATCATTTTACTAAAACGTTCAAACTTTAATTAATCAAAAATTATTAGAGTATCCAAGAACAATCTTTAAAGGAGTATGCAATCATCCGACCAACACCACTGTCCCAATGGTTAAATGCTTCGATTTTGGTTCGAAAAATCACAGTTTCGAAACTTACGTAGCGTGATTCGAACATATATTGACATATATGTTGTATACTACCTAAGGCTTGTAGTACTAATTTGTTCTACGATCTAAGTACTTGGTTAGGGAAAAAAAGAGAGTATGCGATCATCTAATTTTATTCATTATACATAATGTTAACCTAAACTGGATATTTGGTTTTATTTATTTATGTTTTGGATGATAATTTTAGTTGGATGATTGGGTGCTATGTCGAATATACAAGAAAAACAACAGTGGCAGTGGAGGGGGCATGAACAACAGCATGAGTAATAACACACAGAGGTTGCTGATACAAGATTCAAATAACATGGATCACAGCATAAGGCAGATGCAAGTACAGCAGCAGAGCACCGGCAACTACACGGCTCTCCTAGAAAACGACGAAACCTTCTTAGAAGGCTTCCTCACAAACAACAACAGCAGCAACAACACCGCTAATCACACGAATAATCCCAATAACGACACGGTGATACACAGCTCAAGCACCAACTCTATCACGAAGCGGGCACTGCAGTCTCCGTACTGGTGCATTGACGATACTGCCCCTGGTAAACGGGTTTTCCAGACGTACAGCAACAACAACAGCAACAACAATAGTGGAAACAACAGCAGCAGCAACTATAACACTAATAACAATGAGGGTGCAAATACCATAGAGACGTTGCTTGGGCAAAGCCATATTCCTGCAGATAATTATAGCAACGTTCACAGCAGTTTGTTTCTTGGTAGCACTGCTGTCTTTCGCCAACCTGGTAGCCAACCTGGGATGAAGTACTGGAATTCTTGAATCATTGTGAATGTTAATGGTATATGAATATCTGTCTGCATGTATGGTACATGTATAAGAGACAGGTATATGCGTGCATCTACGTGCATGTTTTTATATGTTTTGAGGTTTGTTTGATACATAGGCTTGACATTTGTTTAATTACGGTTTAACTTCTAGATACATTTGTATGCTTGTATGATGTACATATATACATCTTGTAATGTATGACATGGGTACCATGATATATTTGAAGTGCAAGCGATATATTCTTC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_017257164.1	1.7e-68	PREDICTED: NAC transcription factor 25-like
Swissprot	Q9ZNU2.1	3.4e-69	Protein NO APICAL MERISTEM
trEMBL	A0A164VCV4	1.3e-68	NAC domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G61110.1	75.40	1e-78	290	anac025;NAC025	NAC domain containing protein 25

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G09275	AT1G61110.1	187	31	4	20	206	9	180	75.40	1e-78	290
AfisC2G09275	AT3G15510.1	308	105	8	31	314	21	312	52.92	4e-78	288
AfisC2G09275	AT1G52880.1	177	25	3	31	206	21	180	75.71	4e-69	258

Ortholog group

Species	Genes
Allium cepa	g161134.t1
Allium fistulosum	AfisC2G09275
Allium sativum	Asa6G02935.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02365.12	NAM	Family	28	165	95.8	1.9e-27

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0009644	P	response to high light intensity
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009753	P	response to jasmonic acid
GO:0009825	P	multidimensional cell growth
GO:0009835	P	fruit ripening
GO:0009962	P	regulation of flavonoid biosynthetic process
GO:0010029	P	regulation of seed germination
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0042542	P	response to hydrogen peroxide
GO:0042803	F	protein homodimerization activity
GO:0043068	P	positive regulation of programmed cell death
GO:0043565	F	sequence-specific DNA binding
GO:0045995	P	regulation of embryonic development
GO:0046982	F	protein heterodimerization activity
GO:0048317	P	seed morphogenesis
GO:0048527	P	lateral root development
GO:0051091	P	positive regulation of sequence-specific DNA binding transcription factor activity
GO:0080060	P	integument development
GO:0090400	P	stress-induced premature senescence
GO:1900057	P	positive regulation of leaf senescence
GO:1902074	P	response to salt
GO:1904250	P	positive regulation of age-related resistance

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network