result

Gene information

Detail information of AfisC2G09435

Location

Gene	Chr	Start	End	Strand
AfisC2G09435	chr2	1571378756	1571382345	-

Sequences

CDS

>AfisC2G09435
ATGAGTAAAGGACATTTGAATCATCATGCCTCTTCACAAAATTCTATAGAATGGCAATATAGAAATGAATCCATGAATATTTCTCTACCCAATTCTTCAATTCCTGTTTATCATGGAAACAATAACCCACAAATTTCATTGCCTGAATTGTATTACAATAGGAGTGATATGGAGTCATTTATACCCGTACATGTTGATATTGTTCCATCTACCTTACCTGATTTTCCGACCGACTCTTCTTTTATCGAGAGAGCTGCAAAGTTTTCTAGCTTTAGTGCTGGGAATTTTACCGCACTGTTGAATCCTTTAAGCACTTCTATGTCTATTGATCATGTACATAGATGCGAGAGTTTGAGTAGAAATGAAGAAACTAATGATTTGGCAAATCTTTCCGGGGACTCAAAGAAAAGGAAGAGTTGTAGTCAGGATATGGAGTTAGAACAAGGCACACAATTTTCTGGTGAAGTTATTAAAGAAAATGGTGTGAGCAAACAGAATAACGAATGCAGCAGTTCAACTCCTAATGCTACTGATGAGAAAAAATGCAATGGAAAGAATAAGAAAATTAGTGTGGACGATGATGAACCTAAGAAAGATTATATTCATGTAAGAGCTCGTCGTGGACAAGCAACAAATAGCCACAGTCTTGCTGAGAGGGTGAGAAGAGAAAGGATAAGTGAAAGAATGAAGTACCTTCAAGATCTTGTGCCTGGTTGCAATAAAGTCACAGGAAAGGCGGTCATGCTTGATGAGATCATCAACTATGTTCAATCTTTGCAACGACAAGTTGAGTTTCTGTCCATGAAGCTTGCAACGGTTAATCCAAATATCGATTTAAACATAGAAGGACTCCTATCTAAAGATCCTCGATTTGGTCCATCAACAGTAGGTTTCAATCCGGACTTGCTTCAACCTCAACATGGCATGCTTCAGATGGGTGTATCTGGCATGGCAGATCATGCTGATTCACTTAGAAGGATAATAAGTTCACAATTTTCAGCTAGTAATGGATTAAAAGAACCACCACATCCGATGCTGAATCAATGGGAGACCGAGCTCCAAAGCATGGTCCAAATGAACATCAGGACCAGTCTACCCCCAAACATTTCTCAAGGGCAAAACGGTAAACCTCAAGATAGCTTTCCCATGTAA

Protein

Gene

>AfisC2G09435
TTATAATGTCGCCAAAATTAGAATAACGTTAAAGTCTTTCAGTGTTCTAAGTGAGGAAAAATAACAATGATCAAACTTTAGAAAGTTATCAATTAGGTACCTCTCATTTCACTCCATTTATCTTCGGCAGTGATTCTTCAAACCATCGGTTACTTTCTTTGTTTCAAATGAGTAAGGATTTGATTTGATTTTGATTCTCTCTTTGTATTGTCTTTTCACAATCCTCATCCTTTTCTGTTCATGGGCTTTTGTTTTATCTGCTAACCGAGTAATTTGATACTAATTAGTATCTTAATCTTGTTTTAGGTTTATTCACTGATCTGTGATCCTGTACTTTCGGTTCAGTTGATTTGCTAGGGTTTGTTTCTTTTGAGGATTCCTCTGTGAGATTTGGTTTAGTAATATTCTTTGAATTCATTATTGTTGTACCTCATAATGCTTTTATATATACTCAATCAAGAATCTAGTAAATTTATGATGATGGGATTTGTACCTTGTTCCATTTAATAAACGGACTCTGTCCCCAATTTTTATTCTATTTATATTGCTTGTTTCTTCAGTTCGTGAGCTTACAGTTAGAAAAAAGTAAAAAAATGAGTAAAGGACATTTGAATCATCATGCCTCTTCACAAAATTCTATAGAATGGCAATATAGAAATGAATCCATGAATATTTCTCTACCCAATTCTTCAATTCCTGTTTATCATGGAAACAATAACCCACAAATTTCATTGCCTGAATTGTATTACAATAGGAGTGATATGGAGTCATTTATACCCGTACATGTTGATATTGTTCCATCTACCTTACCTGATTTTCCGACCGACTCTTCTTTTATCGAGAGAGCTGCAAAGTTTTCTAGCTTTAGTGCTGGGAATTTTACCGCACTGTTGAATCCTTTAAGCACTTCTATGTCTATTGATCATGTACATAGATGCGAGAGTTTGAGTAGAAATGAAGAAACTAATGATTTGGCAAATCTTTCCGGGGACTCAAAGAAAAGGAAGAGTTGTAGTCAGGTACTAGTATGTTGATCAATTCTATGTTATGGTTATTTAAATAAAATATTTATTTTTAAATTTTGATTCACTTTGTTTCGTATGGAAGGATATGGAGTTAGAACAAGGCACACAATTTTCTGGTGAAGTTATTAAAGAAAATGGTGTGAGCAAACAGAATAACGAATGCAGCAGTTCAACTCCTAATGCTACTGATGAGAAAAAATGCAATGGAAAGAATAAGAAAATTAGTGTGGACGATGATGAACCTAAGAAAGATTATATTCATGTAAGAGCTCGTCGTGGACAAGCAACAAATAGCCACAGTCTTGCTGAGAGGGTAAGTGGCGATTAATGGTATTTATTTGAAGTTATATATATGTGATGTTCAGTTATAGTTTTATCGATTTTTCTTACTTGGTTAAACTTGAATGTAGGTGAGAAGAGAAAGGATAAGTGAAAGAATGAAGTACCTTCAAGATCTTGTGCCTGGTTGCAATAAAGTAGGTATATTTAGTGTTTTACTTTTGTATGTCTTCTGAAATTAACTATAGTGAAAAAACCATAATAGGAAAACATCTTGCTTGATGCACCCTAAGTTATGGAGTAAAACAGTTTAGATTAGTTAGGTCCTTAAGTTCACTATGCCCAGTTGGATTTGGATAACTGACGTTGGTTCAAAACCATGCATCAATTGGTCTGTAGATTTTTGATTGAAGAACACTTGATCTAATTTTCAAACAGAGCAAATTGTCGGAGTAAGAAATTCAGTATGTTATTGAATTCGATGTTTTTGAATGGTAGGTCACAGGAAAGGCGGTCATGCTTGATGAGATCATCAACTATGTTCAATCTTTGCAACGACAAGTTGAGGTGTGCTAATTACAATATGTTCAATGCAAGACTTTGAACTTGACACCTGAGAAGTAATTTTTTTTCTTTCTTCCTTGTATAGTTTCTGTCCATGAAGCTTGCAACGGTTAATCCAAATATCGATTTAAACATAGAAGGACTCCTATCTAAAGATGTAAGTTAGCATTAGCAATTGTACTAATAGTTGTAACATGCATTGGCCAAATCATTACAACTAATTGTGACAATTTTCAGCCTCGATTTGGTCCATCAACAGTAGGTTTCAATCCGGACTTGCTTCAACCTCAACATGGCATGCTTCAGATGGGTGTATCTGGCATGGCAGATCATGCTGATTCACTTAGAAGGATAATAAGTTCACAATTTTCAGCTAGTAATGGATTAAAAGAACCACCACATCCGGTATTTTTTTGTAGCCTTATGTTCTCTTTTGGTTTGCCATTAATGTCAGTTACAACTTATTATACATACTAACTAGTATAGTTAGCCCAAAGGCCCCAAACCTTTAGTACAATGTGTCGGTATTACCAAAATCAAAGTTTGAGTTTGAGGTTCCCATATTAACAAAAATTGGTACCCCCTAAAATGTACTACTTGGTAGGCTATATGGTACGTTCGATGAAAGGGATAGTATGATTGGTGTAGTAAGCACCAGCATCCGTCTTTACAAATAATCCACATGTCGAAGTTCAGTACGTTAAGAAACTGATCCTACGAGACATCATTATCAATGTAGATTTACACACCTAATGCCATTTACCAAACAATTATCGATTGTGTCCTTGAGATATATAATTGCAAACTTATACTGTTTTTCTTAGCTACAGAAGCTGCATATAAAAAGTAAAGGCAAGTGCCAAAGACCATCTCTCTTATTAGGCATTTGCTTGGCAGAAAATCTTATGTTTTGAGATTGGATTTGCATTTTAAAAGTTAGATAAGTTGGAAGCATATAACTAACCCTAAAAGTATAGTACATCATATTCTGTGCATATAGTATCTTAAGTTAATGAATTTCAGAACTTCTACACTATGATATTGATTTTGCAAGGCATATCCATGCTTGGTTAGATAATGAAAAGAGACCCCACTTTTAACATTTTGCTTCAATTAGTACTTAAATTTAACACATTGATTAGAGTTTTATGTTAAATCTGACATTTTATATATATATATATATATATATTCTTGTTCGGTAATCCAAATTTAGAAATCTGGTGGATCAATTTTGTCCATATCAAGCCACATTCAATTCATTTCATCCATAATTTCATTTTCACCAAAAAAAAAGCTGCTTGGCATTGTCACAATATATATGCACAATGAATTCCATATTTGCAAGATGTTGTGAAAATCCACTCACATTTAATACCATGGATTGCATACCATTCATTTCTCACATGCATTTGTTTGACCAAAGGTCTTATGTCCATATACAGATGCTGAATCAATGGGAGACCGAGCTCCAAAGCATGGTCCAAATGAACATCAGGACCAGTCTACCCCCAAACATTTCTCAAGGGCAAAACGGTAAACCTCAAGATAGCTTTCCCATGTAATCTAAAGTTCCTACCCAGCGATATAAGTTTGTATGCTTCTAGTGTCTTTTTTTTTGTATAGTATAGCAAAGGCGTCTCTCTTGGCGTTAACCGTATGTATAAGTTGTAATGATGCATTGTGTATCTTGGAAACATATATGGTATCAAATATGTTCGATGC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020250537.1	5.3e-102	transcription factor bHLH49-like
Swissprot	Q9CAA9.1	8.4e-44	bHLH transcription factor bHLH049
trEMBL	A0A1R3L5Y7	3.8e-102	BHLH domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G68920.3	44.88	8e-64	241		basic helix-loop-helix (bHLH) DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G09435	AT1G68920.3	361	126	12	60	360	111	458	44.88	8e-64	241
AfisC2G09435	AT1G68920.2	362	126	13	60	360	111	459	44.75	2e-62	236
AfisC2G09435	AT1G68920.1	362	126	13	60	360	111	459	44.75	2e-62	236

Ortholog group

Species	Genes
Allium cepa	g515914.t1
Allium fistulosum	AfisC2G09435
Allium sativum	Asa6G00406.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00010.23	HLH	Domain	212	260	28.3	1.1e-06

Gene Ontology

Accession	Ontology	Name
GO:0001046	F	core promoter sequence-specific DNA binding
GO:0001228	F	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0006366	P	transcription from RNA polymerase II promoter
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0046983	F	protein dimerization activity
GO:0009637	P	response to blue light
GO:0009739	P	response to gibberellin
GO:0009911	P	positive regulation of flower development
GO:0040008	P	regulation of growth
GO:0048446	P	petal morphogenesis
GO:0080147	P	root hair cell development
GO:1902448	P	positive regulation of shade avoidance
GO:2000488	P	positive regulation of brassinosteroid biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network