result

Gene information

Detail information of AfisC2G09601

Location

Gene	Chr	Start	End	Strand
AfisC2G09601	chr2	1603261944	1603264022	-

Sequences

CDS

>AfisC2G09601
ATGCCTGCTAGACTTCTTCTTTCTCCTTCTCCTCTTCCTCCTCCCGCCTCCTCTCCCACCCACCACCGCTCGATTCTCATCATCTCCGCCGCATCCTCCGCCTTCGTGGTCATCTTCTTCTTCCTCTTCTCCCTCTACCTCTACTTCTCCCTCCGCCGTCGCCGATCCCCCACCCTCCCCTTCGACCTCGACTGTCCCTCCGCCCCTCCACTCCGCCGCTTCCGCCGCCGCCTCCTCCATTCCTCAACCAACAACTTCCATACCTCCCGCCTCCTCGGTCACGGCGCCTCCGCTTCCGTCTTCCTCGCCACCCTCCCGGACGGATCCTCCGTCGCCGTCAAATCCCTCTCAACCGCCTCCCCCATCTCCTTCCTCGAGTTCAAAAACGAACTCTCTGTTCTGTCCACCATCAAGCTCAGTCCTTTCGTCGTCGCATTGCTGGGATATTCCAGCGACTATAGATGCCTCGTCTTCGAGTACATGCCAAAAGGCTCTCTGCAAACGGCGCTATTCGATTCCAACTCTTCCGGTTTGTGCATGAGTTGGGAAACTAGGTTTAGGGTTATTCTCGATGTCGCGATGGGGTTAGAGTTTCTGCATTCGGAGTGCGATCCCCCAATCGTGCACGGAGATATCAAGCCTAGCAATGTACTTCTCGGATTTGATTTTAGGGCGAAAATCGCAGATTTTGGCCTAGCCAAATTGAAATTGGATAGCGGTGTGGATGAGTTCAGTCAAGATCTAGGGTTGTTTCCGAGCCAAGAGTATGATTTTGAGTTTTCCAAGGCAGTCAAGGTTAGATGCAACCCAATTGCTAGTTTGGATGACCCTAATGGCAAAGAGGCAACAGTTGTGGTGCCTATATACGATGAAGGAAGCCCTTATAGCATCGAGAATAGCAAAGAACTGAATGATGGTGATTGGTGGTGGAAGCAAGAGAGCTGTGAGTTGGATAGTAAGGATTACATTAGTGAATGGATTGGTAGCCAAATCTGCAATTCAAGCCATTATAATTGCAATGATGATACAAAGATGGAGAAGAAGAGCGAGTCAAGGAGAAGAGATGAGAGAACAGTGAAGGAGTGGTGGAAAGAAGAGTACTATGAAGAGATGAGCAAGAAAAGCAGCAGTGTTAAGTGCAGTAAAAGGCTACAATGGTTCAAGAGCAATAACAATCACCATAGCATGAGCAACATTGGTAAAAAATCAAAGAAAAGAAGCAAATCAGTGGGGAGTGAGCGCGACCTTTTTAGTAAAGAGTTAAGTAGCACCACAACAAGTATGAGAGGGACTATTTGCTATGTAGCACCAGAGCACAGTGGATGTGTTCAATACATGGAGAAGGGGGATGTATATAGTTTCGGAGTTTTGATTCTTGTTACCATTTCAGGAAGAAGGCCTTTGAATATACTGCCATCTCCTATGAGATTGGAGAGGTCTAATCTTATAAGTTGGTGCAAGCAATTGGCTAGCTCCGGTAATGTGTTAGATTTAGTCGATGAGAGGTTGAAAGATTTGTACAATAAGGAGCAAGTAAGGTTGTGTGTGAATTTGGCACTTTCGTGTTTGCAAAAGTCACCTGAGTTGAGGCCGAGTAGTGTGGAGATAGTTAGGATTCTTAAAGGGGAGATGGATGCTCCAAGTGTTCCTTTTGAGTTTTCGCCTTCGCCTAATTCGAAGATGTTTAGCAAGTCGAAGAGGAAAGGGATGTCTAACGGTGAGTGA

Protein

Gene

>AfisC2G09601
TTTCGCTCCACAATGCTCCATCCACTCCCAACCCATGCCTGCTAGACTTCTTCTTTCTCCTTCTCCTCTTCCTCCTCCCGCCTCCTCTCCCACCCACCACCGCTCGATTCTCATCATCTCCGCCGCATCCTCCGCCTTCGTGGTCATCTTCTTCTTCCTCTTCTCCCTCTACCTCTACTTCTCCCTCCGCCGTCGCCGATCCCCCACCCTCCCCTTCGACCTCGACTGTCCCTCCGCCCCTCCACTCCGCCGCTTCCGCCGCCGCCTCCTCCATTCCTCAACCAACAACTTCCATACCTCCCGCCTCCTCGGTCACGGCGCCTCCGCTTCCGTCTTCCTCGCCACCCTCCCGGACGGATCCTCCGTCGCCGTCAAATCCCTCTCAACCGCCTCCCCCATCTCCTTCCTCGAGTTCAAAAACGAACTCTCTGTTCTGTCCACCATCAAGCTCAGTCCTTTCGTCGTCGCATTGCTGGGATATTCCAGCGACTATAGATGCCTCGTCTTCGAGTACATGCCAAAAGGCTCTCTGCAAACGGCGCTATTCGATTCCAACTCTTCCGGTTTGTGCATGAGTTGGGAAACTAGGTTTAGGGTTATTCTCGATGTCGCGATGGGGTTAGAGTTTCTGCATTCGGAGTGCGATCCCCCAATCGTGCACGGAGATATCAAGCCTAGCAATGTACTTCTCGGATTTGATTTTAGGGCGAAAATCGCAGATTTTGGCCTAGCCAAATTGAAATTGGATAGCGGTGTGGATGAGTTCAGTCAAGATCTAGGGTTGTTTCCGAGCCAAGAGTATGATTTTGAGTTTTCCAAGGCAGTCAAGGTTAGATGCAACCCAATTGCTAGTTTGGATGACCCTAATGGCAAAGAGGCAACAGTTGTGGTGCCTATATACGATGAAGGAAGCCCTTATAGCATCGAGAATAGCAAAGAACTGAATGATGGTGATTGGTGGTGGAAGCAAGAGAGCTGTGAGTTGGATAGTAAGGATTACATTAGTGAATGGATTGGTAGCCAAATCTGCAATTCAAGCCATTATAATTGCAATGATGATACAAAGATGGAGAAGAAGAGCGAGTCAAGGAGAAGAGATGAGAGAACAGTGAAGGAGTGGTGGAAAGAAGAGTACTATGAAGAGATGAGCAAGAAAAGCAGCAGTGTTAAGTGCAGTAAAAGGCTACAATGGTTCAAGAGCAATAACAATCACCATAGCATGAGCAACATTGGTAAAAAATCAAAGAAAAGAAGCAAATCAGTGGGGAGTGAGCGCGACCTTTTTAGTAAAGAGTTAAGTAGCACCACAACAAGTATGAGAGGGACTATTTGCTATGTAGCACCAGAGCACAGTGGATGTGTTCAATACATGGAGAAGGGGGATGTATATAGTTTCGGAGTTTTGATTCTTGTTACCATTTCAGGAAGAAGGCCTTTGAATATACTGCCATCTCCTATGAGATTGGAGAGGTCTAATCTTATAAGTTGGTGCAAGCAATTGGCTAGCTCCGGTAATGTGTTAGATTTAGTCGATGAGAGGTTGAAAGATTTGTACAATAAGGAGCAAGTAAGGTTGTGTGTGAATTTGGCACTTTCGTGTTTGCAAAAGTCACCTGAGTTGAGGCCGAGTAGTGTGGAGATAGTTAGGATTCTTAAAGGGGAGATGGATGCTCCAAGTGTTCCTTTTGAGTTTTCGCCTTCGCCTAATTCGAAGATGTTTAGCAAGTCGAAGAGGAAAGGGATGTCTAACGGTGAGTGAGTTTGTTCATTCTCGTTTTTCTCATGTTATTAGTAGTAGTATGTGCTTGTTTGATGCTTGATTGAGAAATGAGAATGCCAAATTAGTTTCTTGTGTACACAGACAGTAGCTTAGCTTTAGTTATGTAACACACTGTACCATGTACAACTCTCTGATTCATTTGAGTTTTAGCAAAGGAAAATCAACAAAAAAAAGTTGAACTGCTTATAATAGACAAGAGTTAGTTTATGGTATGTTAGTTCTTCCAAACTATTTTTGTAGGATGAAGACAGCAAATGCTAATTTTCATAGCTAAAGGTAGATAAAATACTACAAGTGAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_009420386.1	3.7e-115	PREDICTED: putative receptor-like protein kinase At1g80870
Swissprot	Q9SAH3.1	4.7e-99	Putative receptor-like protein kinase At1g80870
trEMBL	A0A804KS84	2.6e-115	(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G80870.1	41.34	2e-122	436		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G09601	AT1G80870.1	704	264	28	1	568	1	691	41.34	2e-122	436
AfisC2G09601	AT4G25390.1	663	331	18	1	567	1	651	33.79	1e-76	284
AfisC2G09601	AT5G51770.1	655	335	22	1	568	1	651	34.96	5e-76	282

Ortholog group

Species	Genes
Allium cepa	g32778.t1
Allium fistulosum	AfisC2G09601
Allium sativum
Arabidopsis thaliana	AT1G80870.1
Oryza sativa	LOC_Os08g17320.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	86	235	84.3	7.7e-24
PF00069.22	Pkinase	Domain	419	537	33.6	2.3e-08

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0000380	P	alternative mRNA splicing, via spliceosome
GO:0003729	F	mRNA binding
GO:0005829	C	cytosol
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0007165	P	signal transduction
GO:0005777	C	peroxisome
GO:0005730	C	nucleolus
GO:0005794	C	Golgi apparatus
GO:0007623	P	circadian rhythm
GO:0009409	P	response to cold
GO:0009505	C	plant-type cell wall
GO:0009506	C	plasmodesma
GO:0009553	P	embryo sac development
GO:0009555	P	pollen development
GO:0009570	C	chloroplast stroma
GO:0009651	P	response to salt stress
GO:0009735	P	response to cytokinin
GO:0009737	P	response to abscisic acid
GO:0009809	P	lignin biosynthetic process
GO:0009910	P	negative regulation of flower development
GO:0009934	P	regulation of meristem structural organization
GO:0010043	P	response to zinc ion
GO:0010075	P	regulation of meristem growth
GO:0010223	P	secondary shoot formation
GO:0010363	P	regulation of plant-type hypersensitive response
GO:0010452	P	histone H3-K36 methylation
GO:0010480	P	microsporocyte differentiation
GO:0016116	P	carotenoid metabolic process
GO:0016161	F	beta-amylase activity
GO:0016621	F	cinnamoyl-CoA reductase activity
GO:0031062	P	positive regulation of histone methylation
GO:0033612	F	receptor serine/threonine kinase binding
GO:0040029	P	regulation of gene expression, epigenetic
GO:0042800	F	histone methyltransferase activity (H3-K4 specific)
GO:0042803	F	protein homodimerization activity
GO:0046777	P	protein autophosphorylation
GO:0046975	F	histone methyltransferase activity (H3-K36 specific)
GO:0048046	C	apoplast
GO:0048481	P	plant ovule development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network