Detail information of AfisC2G09668


Location
GeneChrStartEndStrand
AfisC2G09668chr216187037841618704771+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_019051709.11.6e-42PREDICTED: homeobox protein knotted-1-like 13 isoform X1
SwissprotQ0J6N4.27.3e-45Homeobox protein OSH45
trEMBLA0A1U8PYS31.1e-42homeobox protein knotted-1-like 13 isoform X1

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT5G25220.190.725e-46 179KNAT3KNOTTED1-like homeobox gene 3

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag106375.t1; g109718.t1; g193727.t1; g214181.t1; g219250.t1; g284815.t1; g359630.t1; g379892.t1; g432629.t1; g462727.t1; g79811.t1
Allium fistulosumAfisC2G09668
Allium sativumAsa1G01222.1
Arabidopsis thaliana
Oryza sativa

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF05920.8Homeobox_KNFamily337266.71.1e-18

Gene Ontology
AccessionOntologyName
GO:0005515Fprotein binding
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005829Ccytosol
GO:0005634Cnucleus
GO:0009416Presponse to light stimulus
GO:0009722Pdetection of cytokinin stimulus
GO:0010089Pxylem development
GO:0010192Pmucilage biosynthetic process
GO:0045892Pnegative regulation of transcription, DNA-templated
GO:0071345Pcellular response to cytokine stimulus
GO:2000652Pregulation of secondary cell wall biogenesis

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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