result

Gene information

Detail information of AfisC3G00053

Location

Gene	Chr	Start	End	Strand
AfisC3G00053	chr3	11329439	11330720	-

Sequences

CDS

Protein

Gene

>AfisC3G00053
ATGACCATCACAAGAAACCAAGCTAAAGAATATGGACCTATCAAAGTGGTATTGAAGCCAAACCCAAGTTCAGGTTCTCGAGCAAATTCGAACCCAGCAGATTTTCCACCCACTCCTGAAGCTGGTGATCAAGACAACAGTAACCTCTCCATGCCCGCACTTGATGAAGAGGATGACCTCTTGGCAAGGCAAGAATACATCAACAAGAAAACTAAACATACCCTGGATCAGTTAGCAGAAACTCAGCAAGAATTACGTCAGAAAATTCAAGAAATCTCGCAAGAAGCTAATGGTAAAATAAATCTTCTCTTTGCTGCCTTGGAATCCTTCATGCAAGAAATGAAGAATCACAAGAATTCTCCTACCCCTACCTATCAAGATACACAACATTCATCAAGAAGCACTCCATATGATAATGAACCCCCATTCCATAGATCCCCTATTAGAAATCCCACTAAAATACTCCATAATTATGATCAAACCCCATCGATAAATACAAGAGCAGCTCCATACATACCATCATATCGGAGATCTCCAACTAAAAGCCTTCAAAAAGCAACAATTCAAAAGGAAGCAAGCTCGCCATCCAATGCCAAATCCAATCTTCTAAACTGCACCACTTGCTCCATAAAGAAATTAGAAGAAACAACTCAAAGATTGTCGACAAATATTCATATGTTACTCAGCGGCAAAGAATTATGTGTTATATGTTGGAAACCAGGATCTAAGATTTGTTCTAAACGTAAGAGTGTTAGATATTGCTCTAAAGCATGTCAATCAAAGCACTAGATTTGGAAGATTCACATTATTCAAGTTTTAAAGAAGCCATTCATCCAGATAACTTATACAACTTGACAGAAAATAATAAGGGAAATGCACATTCAGACAGTGCTTGGTGGGAATATTCTTATAAAGAATTGGCTGCTGCCAGCAATAATCCTATGATGATTATTTATTGGGAAGAGGAGGATGTGGTTCTGTCTATATAGGAAAACTGAAGCGCATAATCTAGATTCTGGATATAAAGAAGCTTCATAATAATGATGGTCATCAACGTTATTTGCATCTTTAGCATGATCCACTAGTTATATATACAGAACTAGAATGCTCTAATATATTGCTTGGGAAGGGTTATTATGTCAAATTATCATATTTTGGCTTGGCTAAAGTAGGACCAGCTGGTGATAAACCTCATGTTAGAACAGCTGCTGTAGGAACTGATGGATATATTGCTCCTGGATGTGCTAGTACAAATAGATTGACTACTAAATCTGATAGATAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_034219590.1	1.2e-12	probable serine/threonine-protein kinase PBL5 isoform X1
Swissprot	Q9LQQ8.1	1.1e-13	Serine/threonine-protein kinase RLCKVII
trEMBL	A0A5E4EYQ2	8.9e-13	PREDICTED: serine/threonine-kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G07870.2	65.00	3e-15	77.8		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G00053	AT1G07870.2	60	21	98	157	230	289	65.00	3e-15	77.8
AfisC3G00053	AT1G07870.1	60	21	98	157	230	289	65.00	3e-15	77.4
AfisC3G00053	AT5G18610.2	60	22	98	157	210	269	63.33	1e-14	75.5

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	97	157	22.0	7.4e-05

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0002221	P	pattern recognition receptor signaling pathway
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0046658	C	anchored component of plasma membrane
GO:0005634	C	nucleus
GO:0007166	P	cell surface receptor signaling pathway
GO:0009816	P	defense response to bacterium, incompatible interaction
GO:0009941	C	chloroplast envelope
GO:0035420	P	MAPK cascade involved in innate immune response
GO:0046777	P	protein autophosphorylation
GO:0071323	P	cellular response to chitin
GO:1900150	P	regulation of defense response to fungus
GO:1900426	P	positive regulation of defense response to bacterium
GO:1900459	P	positive regulation of brassinosteroid mediated signaling pathway

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network