result

Gene information

Detail information of AfisC3G00251

Location

Gene	Chr	Start	End	Strand
AfisC3G00251	chr3	42930176	42932136	+

Sequences

CDS

Protein

Gene

>AfisC3G00251
ATGGTTAGTTATCTAAATTTGCCATTGATTTTTTTCCTTTTAACATTATTTGCTTTCATTCTTCTAAAAGGTTGTTTCAAACTTGTTTATTTATTTTTACTACAGGGACTGATGCGGCAGGGAATCTTGTTGTATAAATGCATAGTATGGTAAATAATTATACAGTCCTAATGCTGCATCCTTTATACTTGTAATGTTAAGCGCACTCATATGTAAATTAGAACAATAAAGGTAAAATAAAATCCTCACTAGCTTGGTTATAGGGTCATACCATCTCCAAGAAGTTGATGTTATTGCATTTACATGTTCATAGTATTCATTGTACATTACTTTAAACTAATATCGTAAGGGCATGGAATCATTTAAGTGTGTGAAACCTTCATTTACATTATCTATGATCGCTTTAGCTAATTTGTGTTCAAGGTTATGGTATCGATAGGGCCTTTATGTAATATAACAAGTGTGTGATTTATAAGGAAAAAAACTCATGCTTTGTGGGTAATGCTTCTAACCTTAACCACAAACTTCAACTTCAGATTTTCTCTTGCTCTTTTGTTTCCTTATGAAGAAGATATGGTATTGATAAAGAAGTGGAATTGGAAAATGAAAAGGAGAAGAGAATCTTTGATTAATAATGCCAAGTTCTAATAAAATAGCATCGCCGCCAGTAACCAAAAGAAAACAATTAGAATCTGATGCTATGAAGAGAATCGACGAATGGTTTTGTGTTCTTTGACTCTTTGTTCTGCGTTTCCTTTGATTGTCATCGTTTTTTTCATGTTATATATGGGTTTAGCACATGTAAATCTGTCATCAACATGCTCATAAGAGTTTCATTAGATATGTGAATCCAACTTTTCAGATCCTTCTACTACTCCTCTAATATAAATCCTATATAACATCAATCTAGCTAATATTCACTTGATCTTGTTTACACTTTTTTTTGTACAGGATAATATCTCAAGAAATTTCTAGTGATTTAACTCTTCAATTTGGAGATGTTATGTTCTCTTTGCACAAGGTAGGTCTACCTTCAAGCCCTTAGCCTAGTGAAGATGTCATGCATTCTTTCAAAAATACAAACTAAAGTACATCTCCCTGAAATAAAATTGATGCGATATGTTTACTTTTATGCCAAGATGATGTTTTCATTTATCATGTTTATCCTACCGGACCATTGAACTACAAATTTGATACCAATTGTTGTACTGAAAATCACAGTTTACAGATATTGGCCAGTCTAGAAAGGACAAAAAAACACATAATTTTAAAAGACAACACGAACGTTGTAATCGACCTTTCATTATTTGACATGAAAATATATAACCAATTCTTTCTCATTTAAGAACCAATGAACTACATCCTTAGATGGTTAAATGATTACATAGTTGAAGACGTTATAAGCAACCATGGTCATAAGTATCAAATTCTTTTTGTGTGGTAGTTTTAATTTTCAATCTAAAACTGGAAGAGTTTTAATAAAATGTATGACCTCATTATTGCAGTTTCACCTTTCAACAAAATGCGGATACATAAAGAACCTACTATCTGAATCCAAATATTCAAATTTTCCACTTCAAATTCTAGACCTTCCTAGTGGTGCAGAGGCATTTGAACTTGTTGCAAAATTCTGTTATGGCATTAATTTTGAGCTCACCAATGAAAACATTGCAATGGTTAGGTGCGCAGCTGAATACCTTGATATGTCTGATCAATTATCAGTTAAACATTTGATCGGTATTGCTAAAACTTATTTTGAAGAAGTAGTTTTAACAAGTATAACGAGCGCAGTTACAGTTCTTCAAAAGTCAGAAGAGTTACTTCCTACATCCGAGAAAGTAAAATTGATCAGCAGGTGCACTGATGCCATAGCATATCTAGCATTCCTTGATAATCAGTCCTACTTGTCAAACAGTATGGAGAATTTGCAATCTGGACCTGTTGTAGAATGGTGGGTATAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020242026.1	8.3e-48	BTB/POZ domain-containing protein At5g67385
Swissprot	Q66GP0.2	1.1e-44	Protein ATSR1-INTERACTION PROTEIN 1
trEMBL	A0A803KY74	1.1e-46	BTB/POZ domain-containing protein At5g67385-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G67385.1	50.00	6e-50	193		Phototropic-responsive NPH3 family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G00251	AT5G67385.1	186	82	2	16	190	19	204	50.00	6e-50	193
AfisC3G00251	AT3G49970.1	156	71	1	35	190	7	152	48.08	2e-38	155
AfisC3G00251	AT2G30520.1	151	87	1	16	165	24	174	41.72	4e-33	137

Ortholog group

Species	Genes
Allium cepa
Allium fistulosum	AfisC3G00251
Allium sativum	Asa2G06523.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00651.28	BTB	Domain	21	108	33.6	3.3e-08

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005770	C	late endosome
GO:0009416	P	response to light stimulus
GO:0009606	P	tropism
GO:0009860	P	pollen tube growth
GO:0009911	P	positive regulation of flower development
GO:0010087	P	phloem or xylem histogenesis
GO:0010229	P	inflorescence development
GO:0010305	P	leaf vascular tissue pattern formation
GO:0010540	P	basipetal auxin transport
GO:0010588	P	cotyledon vascular tissue pattern formation
GO:0045176	P	apical protein localization
GO:0080022	P	primary root development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network